cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 604 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 604 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 604 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 604 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 GRSLKEVIKC T AI-------- Site 1346
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD NNEDEGTKDY K QG-------- Site 1335
Danio.rerio.CDK1 ---------- - ----------  
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge LSHGGRFIQY N IF-------- Site 1340
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- - ----------  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK -----MENRN S SK-------- Site 1346
Candida.guilliermondii.IME2 MLPQRSNLHD K TP-------- Site 1331
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ --------MD H VV-------- Site 1346
Chlamydomonas.reinhardtii.LF4 ---------- - ----------  
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g VVTDGTTGEK K TI-------- Site 1348
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 MRILKESRPE I IV-------- Site 1346
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 TLPPSLHVSS N LN-------- Site 1324
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho DFKVKLSSER E RV-------- Site 1346
Schizosaccharomyces.octosporus.b.IME2 MSKEIPFSSL N LK-------- Site 1342
Candida.albicans.MAPK3..Extracellular.signal.regul AAATTSSSPR Q VS-------- Site 1343
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. VIRPKDYWDY E SL-------- Site 1340
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 QKRNNGFFDK T AE-------- Site 678
Suberites.domuncula.JNK..Stress.activated.protein. -MSSSDYYSQ R VG-------- Site 1340
Homo.sapiens.CLK3..Dual.specificity.protein.kinase SRSQQSSKRS S RS-------- Site 1329
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci SHRRKRSRSV E DD-------- Site 1333
Homo.sapiens.CLK2..Dual.specificity.protein.kinase SQHSSRRAKS V ED-------- Site 1332
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos EAKKLDTAPE K FS-------- Site 1327
Homo.sapiens.HIPK1..Homeodomain.interacting.protei VTTKSSSSSG E GD-------- Site 1332
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar ---------- - ----------  
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 -----MSFIC I PM-------- Site 1346
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. SLRSREYWDY E AH-------- Site 1340
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM VVNGTGSTEV P QS-------- Site 1334
Strongylocentrotus.purpuratus.CDK1 ---------- - ----------  
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca --------MD R IV-------- Site 1346
Drosophila.melanogaster.CDK1 ---------- - ----------  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------- - ----------  
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. --------MD L RI-------- Site 1346
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH EGEEEGFDAY R KG-------- Site 1334
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d PLSRMSRRAS L SD-------- Site 698
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. DGHKHERPRS E GH-------- Site 1324
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET SKVDNQFYSV E VG-------- Site 1340
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 ---------- - ----------  
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U SKVDNQFYSV E VG-------- Site 1340
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. LIRKKGFYKQ D VN-------- Site 1340
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo PAQVQAAAAA T VK-------- Site 1334
Bombus.terrestris.CDK1 ---------- - ----------  
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 DDEQEDPNDY C KG-------- Site 1335
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar ---------- - ----------  
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. SKRDSNFSVF E IG-------- Site 1340
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d TSAVSSQANS Q PPVQVSVKTQ Site 626
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ---------- - ----------  
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. AADDRSYKE- - ----------  
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G NAADAADERS R KE-------- Site 1346
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 MRILKESRPE I IV-------- Site 1346
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 --------ME P RV-------- Site 1346
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO SKRSSSGADG D YQ-------- Site 1336
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C VIRPKDYWDY E SL-------- Site 1340
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl APAQVQAAAV K AH-------- Site 1337
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 ---------- - ----------  
Homo.sapiens.HIPK3..Homeodomain.interacting.protei TGSKQNCTTG E GD-------- Site 1332
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ALTEGDYVPD S PA-------- Site 1324
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ----MKIPDI G NV-------- Site 1346
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci SHSSRRAKSV E DD-------- Site 1333
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ALTEGDYVPD S PA-------- Site 1324
Naegleria.gruberi.LF4 DMCDEGHSDD E FG-------- Site 1330
Saccharomyces.bayanus.IME2 SSGSEFSIPP D VD-------- Site 1335
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. SLRSREYWDY E AH-------- Site 1340
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ARSRPGYFRQ E IN-------- Site 1340
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki ---------- - ----------  
Dictyostelium.discoideum.DYRK1..Probable.serine.th NNSNNNYNNN T TT-------- Site 1312
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos KVLNHGYDDD N HD-------- Site 1337
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos NAKKRQGMTG G PN-------- Site 1327
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d ----MKIPNI G NV-------- Site 1346
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ----MCAAEV D RH-------- Site 1345
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific SCQTPNYRQP N PN-------- Site 1288
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos EAKKLNVVPE K FS-------- Site 1327
Aspergillus.nidulans.IME2 EHPSRGLTPT S MA-------- Site 1344
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi IKRDIEELCE A VP-------- Site 1344
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se NQQKQQQVQQ I PT-------- Site 1323
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ---------- - ----------  
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ---------- - ----------  
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. SKVDNQFYSV E VG-------- Site 1340
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. IRDDREMEAT V VD-------- Site 1323
Penicillium.marneffei.IME2 AISHEYSLKG T SH-------- Site 1341
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen QKARPTFYRQ E LN-------- Site 1340
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a -MAEKGDCIA S VY-------- Site 1342
Drosophila.melanogaster.MAK ---------- - ----------  
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH FADMQDNWDD I EG-------- Site 1336
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr EYERENVDTF E AS-------- Site 1269
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de LSSQTNSQPP V QV---SMKTQ Site 629
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep GGGSSTFSPI V LT-------- Site 1339
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d CIRKEGFFTV P PE-------- Site 1338
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin SKVDNQFYSV E VG-------- Site 1340
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a SKCDSQFYSV Q VA-------- Site 1340
Homo.sapiens.CLK1..Dual.specificity.protein.kinase HRRSHGKSHR R KR-------- Site 1326
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis LKKNEQNFKL A GV-------- Site 1332
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 MRILKESRPE I IV-------- Site 1346
Candida.parapsilosis.IME2 NDSPPKHVTV H SY-------- Site 1346
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p ---------- - ----------  
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen VVATLGQGPE R SQ-------- Site 1346
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. SKCDSQFYSV Q VA-------- Site 1340
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki THRPREYWDY E SH-------- Site 1340
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U HQSHSKSHRR K RS-------- Site 1327
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a -MAEKGDCIA S VY-------- Site 1342
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d DIRLPEGYLE K LT-------- Site 683
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. THRPREYWDY E SH-------- Site 1340
Yarrowia.lipolytica.SSN3..Serine.threonine.protein YSRMLGGGTN P FA-------- Site 1333
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. SSVKCKFRKE E VN-------- Site 1340
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos KVLNHGYDDD N HD-------- Site 1337
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE PSRPREYWDY E AH-------- Site 1340
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ---------- - ----------  
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD SSSSSKPRSN K FD-------- Site 1339
Candida.orthopsilosis.IME2 NDSPPKHVTV H SY-------- Site 1346
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot -----MALDV K SR-------- Site 1346
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str TSVPENYYVV P IG-------- Site 1340
Debaryomyces.hansenii.IME2 INNPPSGIPL K SF-------- Site 1346
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati NKPLQNPATA E IF-------- Site 1319
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin QASTRSLWSQ Q QQ-------- Site 692
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE --MPTDISPE R DL-------- Site 1346
Caenorhabditis.briggsae.CDK1 IRKNDMNYT- - ----------  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO AHKPDEYWDY E NY-------- Site 1340
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ---------- - ----------  
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos NAKKRQGVIG G PN-------- Site 1327
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ----MDKDGT N LA-------- Site 1346
Monosiga.brevicollis.CDK1 ---------- M AL-------- Site 19
Saccharomyces.cerevisiae.SKY1 ERNEESLKDY R PG-------- Site 1334
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ------MASG Q RS-------- Site 1341
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ---------- - ----------  
Drosophila.melanogaster.GSK3..Protein.kinase.shagg VVATPGQGTD R VQ-------- Site 1346
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ----MCTVVD P RI-------- Site 1346
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ---------- - ----------  
Dictyostelium.discoideum.CDK10..Probable.cyclin.de ---------- M RS-------- Site 19
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d ----MKIPNI G NV-------- Site 1346
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa PTSDTSNFND N IS-------- Site 1336
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ----MEKDGL C RA-------- Site 1346
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep CVRKEGFFTV P PE-------- Site 1338
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac SKRDNNFYSV E IG-------- Site 1340
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. LTRKRGFYKQ D IN-------- Site 1340
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO MSQAKKFGDG D PF-------- Site 1348
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri GGSGGGGVPA V PS-------- Site 1331
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha SKVDNQFYSV E VG-------- Site 1340
Saccharomyces.cerevisiae.CDK1 ---------M S GE-------- Site 26
Lodderomyces.elongisporus.IME2 IGSPQPPQSP K NL-------- Site 1341
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen QKERPTFYRQ E VN-------- Site 1340
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un SRSRQSSRRA K SV-------- Site 1330
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar ----MKIPNI G NV-------- Site 1346
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. RRTVVKGHSN P RS-------- Site 1344
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D AQERRIQELD Q TV-------- Site 1346
Homo.sapiens.CLK4..Dual.specificity.protein.kinase SRSKSHRRKR S RS-------- Site 1329
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U ATSKNSGSNS E GD-------- Site 1332
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d ---------- - ----------  
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen VVATVGQGPE R SQ-------- Site 1346
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 DPIREGEVAH E GD-------- Site 1342
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---------- - ----------  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro MDPMHLYRAR R DK-------- Site 1341
Salmo.salar.CDK1 ---------- - ----------  
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d EGIAARGVDV R SR-------- Site 1346
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ---------- - ----------  
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi PYGQPACFQQ Q QH-------- Site 1321
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen VVATPGQGPD R PQ-------- Site 1346
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable NRRRPTQGER G PG-------- Site 1341
Aspergillus.fumigatus.IME2 PSRVPATTSM A TL-------- Site 1346
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan DFKVKLTGER E RV-------- Site 1346
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ---------- - ----------  
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha FTRRRGFYRQ E LN-------- Site 1340
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S NPQKQQQVPQ I PT-------- Site 1323
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma TATSKNSGSN S EG-------- Site 1331
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina PRRTEGVGPG V PG-------- Site 1334
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d DIRIPDGYLE K LQ-------- Site 677
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. CIRKEGFFTV P PE-------- Site 1338
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de ---------- - ----------  
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S TTAQHQHYTV E VG-------- Site 1340
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ASSRKGFYRI E IN-------- Site 1340
Candida.glabrata.IME2 LDSPPSTIPL K SM-------- Site 1346
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ---------- - ----------  
Schizosaccharomyces.pombe.IME2 PTTNTVFTGK Q PK-------- Site 1335
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P IEQPEQAPAR Q IS-------- Site 1343
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- - ----------  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ------MATI Q SE-------- Site 1346
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. MASSSGSKAE F IV-------- Site 1346
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d PLTRMSRRAS L SD-------- Site 698
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ---------- - ----------  
Branchiostoma.floridae.CDK1 ---------- - ----------  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara SRSRQSSRRA K SV-------- Site 1330
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH KETARDGSTG E VK-------- Site 1346
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD -MARVGRPAR E DV-------- Site 1346
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ASVATDGVDQ Q VE-------- Site 1347
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. RLRGDGFFEV P AA-------- Site 1338
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ---------- - ----------  
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci SRSQQSSKRS S RS-------- Site 1329
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos HKKERKVYND G YD-------- Site 1332
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ---------- - ----------  
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act SVAAKNLALL K AR-------- Site 1338
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. SQERPTFYRQ E LN-------- Site 1340
Lachancea.thermotolerans.SKY1 EKNEESLRDY K PG-------- Site 1334
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a --MAEKFESL M NI-------- Site 1341
Dictyostelium.discoideum.CDK1 -------MES D GG-------- Site 1346
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. PPARKGFYRQ E VT-------- Site 1340
Xenopus.tropicalis.IME2 ---------- - ----------  
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U VTTKSSSSNG E GD-------- Site 1332
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. THRPREYWDY E SH-------- Site 1340
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---------- - ----------  
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ---------M E AF-------- Site 26
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. SKRPRSNSDS F QE-------- Site 1329
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ----MSSEDI D KH-------- Site 1345
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos HKKERKVYND G YD-------- Site 1332
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen VVATPGQGPD R PQ-------- Site 1346
Drosophila.melanogaster.GSK3H..Putative.glycogen.s VVATNAFGAD V MS-------- Site 1346
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD YPKPAKKLPP V VD-------- Site 1326
Encephalitozoon.cuniculi.CDK1 ---------- - ----------  
Saccharomyces.kluyveri.IME2 LDNPPFYIPL K NI-------- Site 1346
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci SHSKSHRRKR S RS-------- Site 1329
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a AGAGPEMVRG Q VF-------- Site 1344
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. SKRPRSNSDC F QE-------- Site 1329
Cryptococcus.neoformans.IME2 ERRDRGNRMT D PD-------- Site 1332
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ------MSTI Q SE-------- Site 1346
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote DDEQEDPNDY C KG-------- Site 1335
Candida.lusitaniae.IME2 SFFFILFLLH S LP-------- Site 1329
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom VTTKSSSSSG E GD-------- Site 1332
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A MKTQQERAKV E DL-------- Site 1349
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep ---------- - ----------  
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. ---------- - ----------  
Gallus.gallus.CDK2 ---------- - ----------  
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ---------- - ----------  
Homo.sapiens.CDK1 ---------- - ----------  
Candida.albicans.CDK1 ---------- - ----------  
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca TQRPREYWDY E SH-------- Site 1340
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a SVVAKNLALL K AR-------- Site 1338
Mus.musculus.ICK..Serine.threonine.protein.kinase. ---------- - ----------  
Saccharomyces.castelli.IME2 LNDPPKNIPL K SL-------- Site 1346
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec SSYSRSHHRR S RK-------- Site 1325
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep -----MAVDV K SR-------- Site 1346
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. PKVRRHSSPS S PT-------- Site 1340
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly GNPNESGHTV T TG-------- Site 1338
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS IPPEIKEEMI Q LY-------- Site 1340
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli -----MALDV K SR-------- Site 1346
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho --MAKQYDSV E CP-------- Site 1342
Homo.sapiens.HIPK2..Homeodomain.interacting.protei TATSKNSGSN S EG-------- Site 1331
Acyrthosiphon.pisum.CDK1 QFVKEGPTKN V SI-------- Site 1346
Candida.tropicalis.CDK1 CDSPPKNLTV H SY-------- Site 1346
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin DFKMKTQIER T KV-------- Site 1346
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G PTAPRITRDK D GN-------- Site 1329
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR SQRPREYWDY E SY-------- Site 1340
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de DIRLPEGYLE K LT-------- Site 683
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 VIRPKDYWDY E SL-------- Site 1340
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d DIRIPDGYLE K LQ-------- Site 677
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA IARRRGFYRQ E LN-------- Site 1340
Candida.albicans.SSN3..Serine.threonine.protein.ki SILTLGPFKH R KD-------- Site 1340
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF RSGDLGRYKH V LG-------- Site 1333
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA VTATEGPPPD R TK-------- Site 1346
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara MESRVEFSRE E IN-------- Site 1340
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de DVVPKLHFVG C SH-------- Site 1346
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei THRPRDYWDY E SH-------- Site 1340
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U GTSKQSTASG D GD-------- Site 1332
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d APTEGDYVPD S PA-------- Site 1324
Candida.dubliniensis.IME2 YDSPPKHLTV H SY-------- Site 1346
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a SKSDGQFYSV Q VA-------- Site 1340
Aspergillus.niger.IME2 HSLSRGAAPT S VA-------- Site 1344
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge SNQSYVFYRQ E LN-------- Site 1340
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ---------- - ----------  
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. PKVRRHSSPS S PT-------- Site 1340
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein THRPREYWDY E SH-------- Site 1340
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty SSGNQPHYDS H VN-------- Site 1288
Schizosaccharomyces.japonicus.IME2 TSKEKSVTTC T KL-------- Site 1346
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. IHVPENYYSV T IG-------- Site 1340
Gallus.gallus.CDK1 ---------- - ----------  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- - ----------  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P SLRMGEVIRE R VQ-------- Site 1338
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE NMNCGGPRPA A LT-------- Site 1346
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ASVATDGVDQ Q VE-------- Site 1347
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. PPARSGFYRQ E VT-------- Site 1340
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ EERPQEYWDY E QG-------- Site 1339
Kluyveromyces.waltii.IME2 VSNPPFYIPV K PI-------- Site 1346
Debaryomyces.hansenii.SKY1 DYVPGGYHTC Y IG-------- Site 1342
Saccharomyces.cerevisiae.IME2 SSGSEFSVPP D VD-------- Site 1335
Schizosaccharomyces.japonicus.b.IME2 ---------- - ----------  
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ------MEKD S LA-------- Site 1346
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein SLRSREYWDY E AH-------- Site 1340
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a --MAEKFESL M NI-------- Site 1341
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ----MEKDSL S RA-------- Site 1346
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST YIKTKERTIH K RV-------- Site 1328
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk PLPRKGYYTQ E VN-------- Site 1340
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ---------- - ----------  
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act NKREKEYYSI D VG-------- Site 1340
Candida.albicans.IME2 YDSPPKHLTV H SY-------- Site 1346
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d --------MS K EM-------- Site 702
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k KNKEKQYFSS L RS-------- Site 1339
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. SQERPTFYRQ E LN-------- Site 1340
Kluyveromyces.lactis.IME2 VNNPPFYIPL K NI-------- Site 1346
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina SVAAKNLALL K AR-------- Site 1338
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. SKVDNQFYSV E VG-------- Site 1340
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. SGPRAGFYRQ E LN-------- Site 1340
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 MRILKESRPE I IV-------- Site 1346
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. SGPRAGFYRQ E LN-------- Site 1340
Amphimedon.queenslandica.CDK1 ---------- - ----------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ---------- - ----------  
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U TPSPGRGSPM E AI-------- Site 26
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME RSRSQSSLED E VD-------- Site 679
Neurospora.crassa.IME2 QGSSHGIGSG Q AL-------- Site 1346
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---------- - ----------  
Dictyostelium.discoideum.DYRK2..Probable.serine.th TSTTTTPTST S PT-------- Site 1247
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---------- - ----------  
Hydra.magnipapillata.CDK1 ---MAVPNDM K SI-------- Site 26
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar RLWGEGYFEV P AS-------- Site 1338
Ashbya.gossypii.IME2 VNNPPFYIPL K PV-------- Site 1346
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi SSTPYSQLAR L QQ-------- Site 1318
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos NAKKRHGVIG G PN-------- Site 1327
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p AHPPPTIDPN D PV-------- Site 1346
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ----MNITEV E EH-------- Site 1345
Schizosaccharomyces.pombe.b.IME2 -MSNESIYSV L DL-------- Site 1341
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a AAAGPEMVRG Q VF-------- Site 1344
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom TGSKQNCTSG E GD-------- Site 1332
Schizosaccharomyces.pombe.CDK1 ---------- - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch SKQRSNSRTR A LS-------- Site 1329
Saccoglossus.kowalevskii.CDK1 ---------- - ----------  
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas --------ME L RV-------- Site 1346
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac SKRDNNFYSV E IG-------- Site 1340
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ---------- - ----------  
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ---------- - ----------  
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ---------- - ----------  
Yarrowia.lipolytica.IME2 THPDIQPVTE D RR-------- Site 1339
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil KKNTIGSVHG K AP-------- Site 1321
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ---------- - ----------  
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K IQEMDDLYDK V PQ-------- Site 1345
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly REKVQDGVTG E TR-------- Site 1346
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk KETARDGSTG E VK-------- Site 1346
Species Residue at Site 604
in 'muscle'
msaprobs

The residue for every species at site 604 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro VVPMRTETDL Q QQ-------- Site 1316
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo PAQVQAAAAA T VK-------- Site 1334
Scheffersomyces.stipitis.SKY1 DYVPGGYHTC Y IG-------- Site 1342
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- - ----------  

Generated by PhyloBot at 11:25, November 19th 2019
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