cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 5 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 5 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 5 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 5 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ---- - ----  
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ---- - ----  
Danio.rerio.CDK1 ---- - ----  
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ---- - ----  
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---- - ----  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---- - ----  
Candida.guilliermondii.IME2 ---- - ----  
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---- - ----  
Chlamydomonas.reinhardtii.LF4 ---- - ----  
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ---- - ----  
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---- - ----  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---- - ----  
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho ---- - ----  
Schizosaccharomyces.octosporus.b.IME2 ---- - ----  
Candida.albicans.MAPK3..Extracellular.signal.regul ---- - ----  
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---- - ----  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---- - ----  
Suberites.domuncula.JNK..Stress.activated.protein. ---- - ----  
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ---- - ----  
Aedes.aegypti.CDK1 ---- - ----  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ---- - ----  
Homo.sapiens.CLK2..Dual.specificity.protein.kinase ---- - ----  
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ---- - ----  
Homo.sapiens.HIPK1..Homeodomain.interacting.protei ---- - ----  
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ---- - ----  
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ---- - ----  
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM ---- - ----  
Strongylocentrotus.purpuratus.CDK1 ---- - ----  
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---- - ----  
Drosophila.melanogaster.CDK1 ---- - ----  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---- - ----  
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---- - ----  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---- - ----  
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d ---- - ----  
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. ---- - ----  
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ---- - ----  
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 ---- - ----  
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ---- - ----  
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ---- - ----  
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo ---- - ----  
Bombus.terrestris.CDK1 ---- - ----  
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---- - ----  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar ---- - ----  
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ---- - ----  
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d --MP N SERH Site 27
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ---- - ----  
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ---- - ----  
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ---- - ----  
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---- - ----  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO ---- - ----  
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---- - ----  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl ---- - ----  
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 ---- - ----  
Homo.sapiens.HIPK3..Homeodomain.interacting.protei ---- - ----  
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ---- - ----  
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ---- - ----  
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci ---- - ----  
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ---- - ----  
Naegleria.gruberi.LF4 ---- - ----  
Saccharomyces.bayanus.IME2 ---- - ----  
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ---- - ----  
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ---- - ----  
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki ---- - ----  
Dictyostelium.discoideum.DYRK1..Probable.serine.th ---- - ----  
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos ---- - ----  
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos ---- - ----  
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d ---- - ----  
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ---- - ----  
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific --MD E EEST Site 702
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos ---- - ----  
Aspergillus.nidulans.IME2 ---- - ----  
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---- - ----  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ---- - ----  
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ---- - ----  
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ---- - ----  
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ---- - ----  
Penicillium.marneffei.IME2 ---- - ----  
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ---- - ----  
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ---- - ----  
Drosophila.melanogaster.MAK ---- - ----  
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---- - ----  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr MAAT E PPSL Site 321
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de ---M P NSER Site 26
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ---- - ----  
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ---- - ----  
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ---- - ----  
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ---- - ----  
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---- - ----  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---- - ----  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---- - ----  
Candida.parapsilosis.IME2 ---- - ----  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p ---- - ----  
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ---- - ----  
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ---- - ----  
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ---- - ----  
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ---- - ----  
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d ---- - ----  
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ---- - ----  
Yarrowia.lipolytica.SSN3..Serine.threonine.protein ---- - ----  
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ---- - ----  
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ---- - ----  
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ---- - ----  
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ---- - ----  
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD ---- - ----  
Candida.orthopsilosis.IME2 ---- - ----  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot ---- - ----  
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ---- - ----  
Debaryomyces.hansenii.IME2 ---- - ----  
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ---- - ----  
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin ---- - ----  
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE ---- - ----  
Caenorhabditis.briggsae.CDK1 ---- - ----  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ---- - ----  
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ---- - ----  
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ---- - ----  
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ---- - ----  
Monosiga.brevicollis.CDK1 ---- - ----  
Saccharomyces.cerevisiae.SKY1 ---- - ----  
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ---- - ----  
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ---- - ----  
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---- - ----  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ---- - ----  
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ---- - ----  
Dictyostelium.discoideum.CDK10..Probable.cyclin.de ---- - ----  
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d ---- - ----  
Ajellomyces.capsulatus.CDK1 ---- - ----  
Dictystelium.discoideum.MAPK3..Extracellular.signa ---- - ----  
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ---- - ----  
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ---- - ----  
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ---- - ----  
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ---- - ----  
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---- - ----  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri ---- - ----  
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ---- - ----  
Saccharomyces.cerevisiae.CDK1 ---- - ----  
Lodderomyces.elongisporus.IME2 ---- - ----  
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen ---- - ----  
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un ---- - ----  
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar ---- - ----  
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ---- - ----  
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ---- - ----  
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---- - ----  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U ---- - ----  
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d ---- - ----  
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ---- - ----  
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---- - ----  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro ---- - ----  
Salmo.salar.CDK1 ---- - ----  
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d ---- - ----  
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ---- - ----  
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ---- - ----  
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ---- - ----  
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable ---- - ----  
Aspergillus.fumigatus.IME2 ---- - ----  
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan ---- - ----  
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ---- - ----  
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ---- - ----  
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S ---- - ----  
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma ---- - ----  
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina ---- - ----  
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d ---- - ----  
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ---- - ----  
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de ---- - ----  
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ---- - ----  
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ---- - ----  
Candida.glabrata.IME2 ---- - ----  
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ---- - ----  
Schizosaccharomyces.pombe.IME2 ---- - ----  
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---- - ----  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ---- - ----  
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---- - ----  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d ---- - ----  
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ---- - ----  
Branchiostoma.floridae.CDK1 ---- - ----  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara ---- - ----  
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ---- - ----  
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD ---- - ----  
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ---- - ----  
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---- - ----  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ---- - ----  
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ---- - ----  
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos ---- - ----  
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ---- - ----  
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act ---- - ----  
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. ---- - ----  
Lachancea.thermotolerans.SKY1 ---- - ----  
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ---- - ----  
Dictyostelium.discoideum.CDK1 ---- - ----  
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ---- - ----  
Xenopus.tropicalis.IME2 ---- - ----  
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U ---- - ----  
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ---- - ----  
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ---- - ----  
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. ---- - ----  
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ---- - ----  
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos ---- - ----  
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ---- - ----  
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ---- - ----  
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ---- - ----  
Encephalitozoon.cuniculi.CDK1 ---- - ----  
Saccharomyces.kluyveri.IME2 ---- - ----  
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---- - ----  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a ---- - ----  
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. ---- - ----  
Cryptococcus.neoformans.IME2 ---- - ----  
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ---- - ----  
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---- - ----  
Candida.lusitaniae.IME2 ---- - ----  
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom ---- - ----  
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A ---- - ----  
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep ---- - ----  
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. ---- - ----  
Gallus.gallus.CDK2 ---- - ----  
Emericella.nidulans.CDK1 ---- - ----  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ---- - ----  
Homo.sapiens.CDK1 ---- - ----  
Candida.albicans.CDK1 ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ---- - ----  
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a ---- - ----  
Mus.musculus.ICK..Serine.threonine.protein.kinase. ---- - ----  
Saccharomyces.castelli.IME2 ---- - ----  
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ---- - ----  
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep ---- - ----  
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. ---- - ----  
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ---- - ----  
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS ---- - ----  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli ---- - ----  
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho ---- - ----  
Homo.sapiens.HIPK2..Homeodomain.interacting.protei ---- - ----  
Acyrthosiphon.pisum.CDK1 ---- - ----  
Candida.tropicalis.CDK1 ---- - ----  
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin ---- - ----  
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ---- - ----  
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ---- - ----  
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de ---- - ----  
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---- - ----  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d ---- - ----  
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA ---- - ----  
Candida.albicans.SSN3..Serine.threonine.protein.ki ---- - ----  
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF ---- - ----  
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ---- - ----  
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de ---- - ----  
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ---- - ----  
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U ---- - ----  
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ---- - ----  
Candida.dubliniensis.IME2 ---- - ----  
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ---- - ----  
Aspergillus.niger.IME2 ---- - ----  
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge ---- - ----  
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ---- - ----  
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. ---- - ----  
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ---- - ----  
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty ---- - ----  
Schizosaccharomyces.japonicus.IME2 ---- - ----  
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ---- - ----  
Gallus.gallus.CDK1 ---- - ----  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---- - ----  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ---- - ----  
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---- - ----  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ---- - ----  
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ---- - ----  
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---- - ----  
Kluyveromyces.waltii.IME2 ---- - ----  
Debaryomyces.hansenii.SKY1 ---- - ----  
Saccharomyces.cerevisiae.IME2 ---- - ----  
Schizosaccharomyces.japonicus.b.IME2 ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ---- - ----  
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ---- - ----  
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ---- - ----  
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ---- - ----  
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST ---- - ----  
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ---- - ----  
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ---- - ----  
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ---- - ----  
Candida.albicans.IME2 ---- - ----  
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ---- - ----  
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ---- - ----  
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ---- - ----  
Kluyveromyces.lactis.IME2 ---- - ----  
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina ---- - ----  
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ---- - ----  
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. ---- - ----  
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---- - ----  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. ---- - ----  
Amphimedon.queenslandica.CDK1 ---- - ----  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ---- - ----  
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ---- - ----  
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME ---- - ----  
Neurospora.crassa.IME2 ---- - ----  
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---- - ----  
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---- - ----  
Hydra.magnipapillata.CDK1 ---- - ----  
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ---- - ----  
Ashbya.gossypii.IME2 ---- - ----  
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ---- - ----  
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ---- - ----  
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ---- - ----  
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ---- - ----  
Schizosaccharomyces.pombe.b.IME2 ---- - ----  
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ---- - ----  
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom ---- - ----  
Schizosaccharomyces.pombe.CDK1 ---- - ----  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ---- - ----  
Saccoglossus.kowalevskii.CDK1 ---- - ----  
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---- - ----  
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ---- - ----  
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ---- - ----  
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ---- - ----  
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ---- - ----  
Yarrowia.lipolytica.IME2 ---- - ----  
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil ---- - ----  
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ---- - ----  
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K ---- - ----  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ---- - ----  
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ---- - ----  
Species Residue at Site 5
in 'muscle'
msaprobs

The residue for every species at site 5 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ---- - ----  
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo ---- - ----  
Scheffersomyces.stipitis.SKY1 ---- - ----  
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---- - ----  

Generated by PhyloBot at 04:41, November 12th 2019
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