cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 2528 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 2528 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 2528 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 2528 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ETSQTEGPNQ L -R-------- Site 4753
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ---------- - ----------  
Danio.rerio.CDK1 -------PLR L ---------- Site 4923
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge EALAFNPEYQ Q ---------- Site 4923
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- - ----------  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK --MLNGNSRT L -L-------- Site 4922
Candida.guilliermondii.IME2 SGSCVSLAQL M -G-------- Site 4922
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ SRQASSVEPS E -Q-------- Site 3285
Chlamydomonas.reinhardtii.LF4 STRRSTLNTY Y -E-------- Site 4718
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g EPIVVKQADA D -S-------- Site 4922
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 DKEKQNGKPL I -AD------- Site 4921
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 KLDPTSYEAY Q -Q-------- Site 3280
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho QRSNPHAAYP N ---------- Site 4892
Schizosaccharomyces.octosporus.b.IME2 MSKTDQSILQ V -N-------- Site 4783
Candida.albicans.MAPK3..Extracellular.signal.regul KLLYEEIMKP L ---------- Site 4923
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. VRAAESSRMR T -Q-------- Site 4922
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 DISLFSNSRN R -R-------- Site 4922
Suberites.domuncula.JNK..Stress.activated.protein. KTRIYEEVKT Y -NS------- Site 4921
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ERSFHTSRNP S -R-------- Site 4922
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CLK2..Dual.specificity.protein.kinase NKLWDSSRDI S -R-------- Site 4922
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos QDCLQHGADT V -Q-------- Site 3965
Homo.sapiens.HIPK1..Homeodomain.interacting.protei PSSSGLKPRS N -V-------- Site 4645
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar KTRKSNYHFP N -I-------- Site 4922
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ---------- - ----------  
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. NAVLSSGLTA A -R-------- Site 4922
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM KERQPDNAP- - ----------  
Strongylocentrotus.purpuratus.CDK1 ---------- - ----------  
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca RGSYSPGPSN R -T-------- Site 4922
Drosophila.melanogaster.CDK1 ---GFQSGLV R -N-------- Site 4922
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 KMSNDQQMKN R ---------- Site 3276
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. SPQQTTTTTS S -S-------- Site 4894
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH VDDQMNNLHI K -G-------- Site 4922
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d QPGRGKNRRQ S IF-------- Site 4921
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. YTTVLIGTQH Y -SHI------ Site 4920
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET LETSAGPLGC C -R-------- Site 4922
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 RTSHNKIVPS T -S-------- Site 3597
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U LETSAGPLGC C -R-------- Site 4922
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. SPIARKDSRR R -SGMKL---- Site 4918
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo SEMPPSPLVW E ---------- Site 4923
Bombus.terrestris.CDK1 ---------- - ----------  
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - ----------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar VPVPGNCNYR V -D-------- Site 3583
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. LETSAGTLGC C -R-------- Site 4922
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d SQPEAEPPGH L PH-------- Site 3922
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. GTGANGKVPV L -R-------- Site 4886
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. TEAQREYLLK K ---------- Site 4923
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G SEAQKAKLVR K ---------- Site 4923
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 DKEKQNGKPL I -AD------- Site 4921
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 SGSRDNFPGS E -E-------- Site 3300
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO GGEAGGAQVP V -LKQRAHAQS Site 4517
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C VRAAETSRMR S -Q-------- Site 4922
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl SEMPPSPLVW E ---------- Site 4923
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 DTKKLNYRFP N -I-------- Site 4922
Homo.sapiens.HIPK3..Homeodomain.interacting.protei TSSSGQSSPS P CK-------- Site 4638
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O QGASAAGPGF S -LKF------ Site 4920
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d QLQHRTLPRH N -TSSSREELT Site 4380
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci TKLWDSSRDI S -R-------- Site 4922
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O QGASAAGPGF S -LKF------ Site 4920
Naegleria.gruberi.LF4 NLNTSNQSNA S -G-------- Site 4789
Saccharomyces.bayanus.IME2 EIPEQDEFHK K ---------- Site 4838
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. NTVLSSGLTA A -R-------- Site 4922
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a APAVAESKET A -L-------- Site 4922
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki DNVEQTQQAQ Q -V-------- Site 4922
Dictyostelium.discoideum.DYRK1..Probable.serine.th SEEDNSKVHI N -S-------- Site 3937
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos RPPSPTSPPP P -E-------- Site 3940
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos IQQRTVLPKL V -S-------- Site 4922
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d DPHSDDGTAP K -E-------- Site 4538
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a APSGVKTQVR A -M-------- Site 4780
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific ECVKSSSQTL W -K-------- Site 4922
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos SPKSTNILPP I -V-------- Site 4922
Aspergillus.nidulans.IME2 IRSMGDSPAS M ---------- Site 4781
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ASELPPSPQA W ---------- Site 4923
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. QSRYLPGVNP K -N-------- Site 4746
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep -------HLR L ---------- Site 4923
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. LEASAGPLGC C -R-------- Site 4922
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. PEHARKQCPF L GL-------- Site 4921
Penicillium.marneffei.IME2 MTESPTPSVG G -P-------- Site 4783
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen EWKSKIYIQN R -N-------- Site 4922
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a RDNKPHHYSE P -K-------- Site 4790
Drosophila.melanogaster.MAK LGSKLKTSAK R -Q-------- Site 4743
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - ----------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - ----------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de SQPEAEPPGH L PH-------- Site 3924
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep LPINKKKREF D -D-------- Site 4922
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d AAAEGQSKRC R -P-------- Site 4922
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin LEASAGPLGC C -R-------- Site 4922
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a STGPLEGCR- - ----------  
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ------LKKS I ---------- Site 4923
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 DKEKQNGKPL I -AD------- Site 4921
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p SLRSESKRFK G -N-------- Site 4922
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen STDATPTLTN S -S-------- Site 4922
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. VKDQPSAQMQ Q ---------- Site 4923
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki GMPVPAAAGA Q -Q-------- Site 4922
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ---------- - ----------  
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a RDNKPHHYSE P -K-------- Site 4790
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d GRPAFRVVDT E -F-------- Site 4922
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. GMPVPAAAGA Q -Q-------- Site 4922
Yarrowia.lipolytica.SSN3..Serine.threonine.protein GGDNLHPRKK Q -K-------- Site 4922
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. KDEFEGTCPL P ---------- Site 4923
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos RPPSPTSPPP P -E-------- Site 3940
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE SSQSSDAKID G -A-------- Site 4922
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH LASHTDLLAK V SL-------- Site 4921
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD SASPSTTSSS S -S-------- Site 4887
Candida.orthopsilosis.IME2 ---------- - ----------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot IEQGTLKKKL V -F-------- Site 4922
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str RTHDVYGVGQ R -R-------- Site 4922
Debaryomyces.hansenii.IME2 DSNITPRGIN N -T-------- Site 4823
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati VRKLQPAVKT T ---------- Site 4923
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin SSNGPIRKKK R ---------- Site 4923
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE RRRTNRAASP N -DHIF----- Site 4919
Caenorhabditis.briggsae.CDK1 PAGNYRGELQ L -E-------- Site 4922
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ------NPNN Q -Q-------- Site 4922
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de NPELIRPFIP E -G-------- Site 4922
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos IPLCSVLPKL I -S-------- Site 4922
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. SSSQNSSEVN A -S-------- Site 4922
Monosiga.brevicollis.CDK1 GTHVPLVPRI A -G-------- Site 4922
Saccharomyces.cerevisiae.SKY1 FEEVRDHKRH - ----------  
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ELLYEEIIKP L -Q-------- Site 4922
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U QSGPYHSIKP S -A-------- Site 4922
Drosophila.melanogaster.GSK3..Protein.kinase.shagg AQPQSQGTAA A -A-------- Site 4794
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas QTADQEGRVK Q -N-------- Site 4922
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. KEAPPLTLSL V -K-------- Site 4777
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d PFVKPNQPPP A -G-------- Site 3590
Dictyostelium.discoideum.CDK10..Probable.cyclin.de QNNNMDSYKY S -K-------- Site 4922
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d NRHLYNDPVP R -R-------- Site 4458
Ajellomyces.capsulatus.CDK1 AYSGRERLQP Y -P-------- Site 4922
Dictystelium.discoideum.MAPK3..Extracellular.signa KQQIHQQVNQ Q -SIKN----- Site 4919
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep PPSQNTSELN T -A-------- Site 4922
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep LGTESQSRRG R -P-------- Site 4922
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac LEAAAGPLGC C -R-------- Site 4922
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. KDSRRRSGMK L -Q-------- Site 4922
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- - ----------  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri HSSKVSKKEE R ---------- Site 4923
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha LEASAGPLGC C -R-------- Site 4922
Saccharomyces.cerevisiae.CDK1 ---------- - ----------  
Lodderomyces.elongisporus.IME2 GFPNIENSYE N -Y-------- Site 4847
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen EPPVFDVDEM E -S-------- Site 4922
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un WDTGRDISR- - ----------  
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar DPHTEDGAST K -E-------- Site 4671
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. NDIYRLTGKL I ---------- Site 4923
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D CVRERIHHLE L -E-------- Site 4688
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U AYRHSRAPGH S -F-------- Site 4767
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d STKRFNYHFP N -I-------- Site 4922
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen SDATTATLAS S -S-------- Site 4922
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 PAGNYRGELE L -F-------- Site 4922
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---------- - ----------  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro IVQPAARKKA R -I-------- Site 4922
Salmo.salar.CDK1 -------HLR L ---------- Site 4923
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d DIAKKLSF-- - ----------  
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d NPELIRPFIL E -G-------- Site 4922
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi SSKTFEKKRG K -K-------- Site 4922
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen NNAASASASN S -T-------- Site 4922
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable NNAYRGLASL V ---------- Site 4817
Aspergillus.fumigatus.IME2 PQGSIRAMTD S -PVSTSGTPG Site 4785
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan QRSNPHAAYQ N -P-------- Site 4892
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha TGNKKTGNK- - ----------  
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha SPIAQKDSKK R -SGMSL---- Site 4918
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S ASELPPSPQA W ---------- Site 4923
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma PYSDSSSNTS P -Y-------- Site 4662
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina TARFQPGVLE A -P-------- Site 4922
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d GHGKNRRQSM L -F-------- Site 4922
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ATSEGQSKRC K -P-------- Site 4922
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de NLRKFNYHLP N -I-------- Site 4922
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S EAHNTNNRTR - ----------  
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. SPLLPFASPP L -PAPL----- Site 4919
Candida.glabrata.IME2 EKEPFSTVPE R -C-------- Site 4801
Homo.sapiens.MAK..Serine.threonine.protein.kinase. QSRYLPGVNP K -K-------- Site 4747
Schizosaccharomyces.pombe.IME2 PLPSTEFLVA I -N-------- Site 4762
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P KMLYEEIMKP L ---------- Site 4923
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- - ----------  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom HKARKAPAGS K ---------- Site 4804
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. QTDKTKSNMK G -F-------- Site 4922
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d HPGRGKSRRQ S IF-------- Site 4921
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d VQLKFDHLPN I ---------- Site 4923
Branchiostoma.floridae.CDK1 DVRKIEVPNL K -G-------- Site 4922
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara TKMWDSSRDI S -R-------- Site 4922
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH VPIPIHRARI D ---------- Site 4923
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD SSMPVTLSMP E -I-------- Site 4893
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR SATGGDMAGP S -A-------- Site 4922
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. QTSYQRRDTP T -LRSAA---- Site 4725
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ERSFHSSRNP S -R-------- Site 4922
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos PTNSSSTQDS M -E-------- Site 3891
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep -------HLR L ---------- Site 4923
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act AASGLLAPQP L -V-------- Site 4496
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. VPPPLDQEEM E -S-------- Site 4922
Lachancea.thermotolerans.SKY1 SQEVTGHPRH - ----------  
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a QLSAQHQSAD V ---------- Site 4747
Dictyostelium.discoideum.CDK1 ---------- - ----------  
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. KPPRQLGARV P -KETAL---- Site 4918
Xenopus.tropicalis.IME2 --------HL I ---------- Site 4923
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U KYKPTNSGMK L -R-------- Site 4637
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. GMPVPAAAGA Q -Q-------- Site 4922
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---------- - ----------  
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara HVQQRHCR-- - ----------  
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. KRHHLVGVNK C -W-------- Site 4922
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD TKPDTTAPTL S -T-------- Site 4922
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos PTNSSSTQDS M -E-------- Site 3891
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen NNAASASASN S -T-------- Site 4922
Drosophila.melanogaster.GSK3H..Putative.glycogen.s SGKALESPPG F -L-------- Site 4558
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD NQRKTSTITL S ---------- Site 4923
Encephalitozoon.cuniculi.CDK1 ---------- - ----------  
Saccharomyces.kluyveri.IME2 PQLNDEGYKY L -K-------- Site 4811
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci -------LLK R -K-------- Site 4922
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a EETARFQPGY R -S-------- Site 4922
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. KGHHPAQFSK C -W-------- Site 4922
Cryptococcus.neoformans.IME2 SSTNLASEAP T -PNQDTRSIY Site 4744
Homo.sapiens.HIPK4..Homeodomain.interacting.protei HKARKPPAGS K ---------- Site 4803
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - ----------  
Candida.lusitaniae.IME2 KMVSKSYFQK Y -T-------- Site 4874
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom PNSSSLKARS N ---------- Site 4645
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A MQQQQQAQAG G -M-------- Site 4855
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep PSLIQKHAMS C -S-------- Site 4922
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. KYKFDHHLPN I ---------- Site 4923
Gallus.gallus.CDK2 -------HLR L ---------- Site 4923
Emericella.nidulans.CDK1 YSGRARRNGF H ---------- Site 4923
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. GSGTNGRVPV L -R-------- Site 4887
Homo.sapiens.CDK1 ---------- - ----------  
Candida.albicans.CDK1 DNIGIDKHQN M -Q-------- Site 4922
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ATQVPTAAGA Q -P-------- Site 4922
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a SQPVCPPPGP V -P-------- Site 4471
Mus.musculus.ICK..Serine.threonine.protein.kinase. SQRRDTPTLQ S -S-------- Site 4728
Saccharomyces.castelli.IME2 NLENLDNGDN K -E-------- Site 4796
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ---------- - ----------  
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep EQGILPKKLI F ---------- Site 4923
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. NSYGKSLSNS K -H-------- Site 4922
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly VPEWYRGEGA G AA-------- Site 4921
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS DLLDKDVLLI S -E-------- Site 4922
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli EQGTLKKKLV F ---------- Site 4923
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho TTNQTEFERV F ---------- Site 4923
Homo.sapiens.HIPK2..Homeodomain.interacting.protei PYSDSSSNTS P -Y-------- Site 4660
Acyrthosiphon.pisum.CDK1 ---------- - ----------  
Candida.tropicalis.CDK1 YIGIDQGEEN S ---------- Site 4855
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin HHQQQQQQQQ Q -Q-------- Site 4901
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G LHKPGHNSSE L -NH------- Site 4921
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR TPNALQGPIS T -TE------- Site 4921
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de GRPAFRVVDT E -F-------- Site 4922
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 VRAAETSRMR S -Q-------- Site 4922
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d GHGKNRRQSM L -F-------- Site 4922
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA SPIARKDSKK R -SGMSL---- Site 4918
Candida.albicans.SSN3..Serine.threonine.protein.ki QNVQIQQVHQ M -Q-------- Site 4888
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF GGGGAADLGV Q ---------- Site 4801
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA TASSATGGSS S -K-------- Site 4922
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara RDSKRRNTLT M -S-------- Site 4922
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de RPEQDRSQRL R -N-------- Site 4537
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei GTPVAAAAGA T -Q-------- Site 4922
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U GQSSPSPCKR R NS-------- Site 4642
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d QGASAAGPGF S -LKF------ Site 4920
Candida.dubliniensis.IME2 KQPERNSSGN E ---------- Site 4860
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a LDASTGPLEG C -R-------- Site 4922
Aspergillus.niger.IME2 GESPVSTSGT G GP-------- Site 4782
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge VPPPLDSEEM E -S-------- Site 4922
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d SVRLTERAKK R -R-------- Site 3569
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. NSYGKSLSNS K -H-------- Site 4922
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein GMPVPAATGA Q -Q-------- Site 4922
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty RQHLSHQPSQ S VQ-------- Site 3914
Schizosaccharomyces.japonicus.IME2 QPRTPSSKRF T -S-------- Site 4799
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. LTDYARTHDI Y -S-------- Site 4922
Gallus.gallus.CDK1 KSTLPANLIK K -F-------- Site 4922
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- - ----------  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P TPMPKQEMMA K LD-------- Site 4921
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE KPRVLRQLRF N -NL------- Site 4921
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. STTSGDVAGP S -A-------- Site 4922
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. KPPRQLGARV S -KETPL---- Site 4918
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- - ----------  
Kluyveromyces.waltii.IME2 SLQNAEDGNA L -E-------- Site 4822
Debaryomyces.hansenii.SKY1 SGEDIPGWSK E -V-------- Site 4922
Saccharomyces.cerevisiae.IME2 EIPEKDEFQR K -Q-------- Site 4838
Schizosaccharomyces.japonicus.b.IME2 QPMKLQTKDT Q -K-------- Site 4764
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un KGVDEGSAG- - ----------  
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein NAVLSSGLTT A -R-------- Site 4922
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a TIQLSSQHEP T ---------- Site 4746
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep PSNQSTSELN T -A-------- Site 4922
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST LKHFVSAPSS S -L-------- Site 4922
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk EPLVADSKET S -V-------- Site 4922
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de NLSHPNSRLT E -R-------- Site 3563
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act RGQPASLAQV Q -Q-------- Site 4922
Candida.albicans.IME2 KQPERNSSGN E -S-------- Site 4860
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d FTHICTATDE V -K-------- Site 4922
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k MPTWPSSHKK T ---------- Site 4923
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. VPPPLDQEEM E -S-------- Site 4922
Kluyveromyces.lactis.IME2 DHENYRIQVL D -E-------- Site 3997
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina PVPQPACPPP G -P-------- Site 4464
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. LEASAGPLGC C -R-------- Site 4922
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. KPPEPPKPPG S LEIEQ----- Site 4918
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 DKEKQNGKPL I -AD------- Site 4921
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. KPLEPSQLPG T HEIEQ----- Site 4918
Amphimedon.queenslandica.CDK1 ---------- - ----------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d NRRRQQVLPL K -S-------- Site 4922
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U PEQRPVLRRD Y -R-------- Site 4922
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME GNKLSSGIIT G -N-------- Site 4886
Neurospora.crassa.IME2 PMPPAHRAPQ H -S-------- Site 4769
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---------- - ----------  
Dictyostelium.discoideum.DYRK2..Probable.serine.th KVIAPTAPST P -S-------- Site 4922
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---------- - ----------  
Hydra.magnipapillata.CDK1 ---------- - ----------  
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar TGTETQAKRA K -P-------- Site 4922
Ashbya.gossypii.IME2 GRAASDSTLS G -PEELTKEIS Site 3983
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi SSKTFDKKRE R -K-------- Site 4922
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos IPLCSVLPKL I -S-------- Site 4922
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p SSVKKKLYPK S -K-------- Site 4922
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace GPVAADPRGR S ---------- Site 4767
Schizosaccharomyces.pombe.b.IME2 KPPSNGSNIA I -N-------- Site 4825
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ETARFQPGYR S ---------- Site 4923
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom STLSTSSSGQ S SP-------- Site 4634
Schizosaccharomyces.pombe.CDK1 ---------- - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch SKNWDSNRDI S -R-------- Site 4922
Saccoglossus.kowalevskii.CDK1 ---------- - ----------  
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas VASSGLQSVV H -R-------- Site 4922
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac EERTKNGVIR G ---------- Site 4913
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep --QQCTAGRS S -R-------- Site 4922
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable NNAFRGLASL A ---------- Site 4802
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep -ARQYVLQRF R -H-------- Site 4922
Yarrowia.lipolytica.IME2 TAKPLNAIKP E -S-------- Site 3985
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil ASDEPSRKKN R -R-------- Site 4922
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli -------PLR L ---------- Site 4923
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K QRREDHFTGV V -E-------- Site 4922
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly TPMNKSEMMA K LD-------- Site 4921
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk VPIPIHRARI D ---------- Site 4923
Species Residue at Site 2528
in 'muscle'
msaprobs

The residue for every species at site 2528 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro QQRQHMPQAQ S -S-------- Site 3929
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo SEMPPSPLVW E ---------- Site 4923
Scheffersomyces.stipitis.SKY1 SGEDIPGWSK E -L-------- Site 4922
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- - ----------  

Generated by PhyloBot at 02:40, November 28th 2020
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