cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 2240 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 2240 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 2240 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 2240 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 -------AKE E KVQ-----KP Site 3633
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD -------DVP P FLN------- Site 4920
Danio.rerio.CDK1 -------DVT M PVP------- Site 3633
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge -------SLH D ISD------- Site 3633
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------D F CPP------- Site 3322
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---------- - ----------  
Candida.guilliermondii.IME2 -----YTPEK K AME-----TS Site 4798
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ -------SNP R MRA-----GE Site 3076
Chlamydomonas.reinhardtii.LF4 -------AEK R QKA-----LL Site 4560
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g -------ELR D PNC------- Site 3633
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 -------PNP P NEK-----SK Site 3192
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho -------EDP L PTS------- Site 3633
Schizosaccharomyces.octosporus.b.IME2 -------KPP E SPN-----GQ Site 4647
Candida.albicans.MAPK3..Extracellular.signal.regul -------LYH D PND------- Site 3633
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- - ----------  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 -------NRD D SLA-----VA Site 3156
Suberites.domuncula.JNK..Stress.activated.protein. --IWYDPAEV H APP-----PK Site 4889
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ---------- - ----------  
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci -------PLK K HT-------- Site 3633
Homo.sapiens.CLK2..Dual.specificity.protein.kinase -------RLR A EPP------- Site 3633
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos -------QSR N LKP------- Site 3633
Homo.sapiens.HIPK1..Homeodomain.interacting.protei PFQQTFIVCP P AFQ------- Site 3600
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar -------SVR E AGD------- Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 -------DFV A FNN------- Site 3633
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. -------PVV K EQS------- Site 3633
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM -------QYY D PGD------- Site 3633
Strongylocentrotus.purpuratus.CDK1 ------VPPP R LPT------- Site 4920
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca -------NVD K HQV-----GV Site 3261
Drosophila.melanogaster.CDK1 ---------- - ----------  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 -------QAN R ANN------- Site 3167
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. -------DNK Q IQQ-----QI Site 3237
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---------- - ----------  
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d -------SLG E RVH------- Site 3633
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. -------DLP P KLF----ELP Site 3633
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET --VWYDPAEV E APP------- Site 4548
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 -------KVQ K DAR-----NV Site 3511
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U --VWYDPAEV E APP------- Site 4548
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. -------PFR D PEE------- Site 3633
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo -------EGR L RYH------- Site 4782
Bombus.terrestris.CDK1 -------GVT L VPP------- Site 3633
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - --S-------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar -------RFA Q ELK-----LR Site 3451
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. --VWYDPLEA E APP------- Site 4548
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d ----DVELSK M APPDLPHWQD Site 3634
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. -------AET Q TLA-----KH Site 4751
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. -------ELR E PTT------- Site 3633
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G -------ELH D SAT------- Site 3633
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 -------TSA A LPP-----GI Site 2751
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO GSATMQPPLQ V PPQ-----QY Site 4238
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- - ----------  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl -------EGR L RYH------- Site 4782
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 -------NIR E IED------- Site 3633
Homo.sapiens.HIPK3..Homeodomain.interacting.protei -------GKP T SYSIRVDNTV Site 3580
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O -------ETP L PID------- Site 3633
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d -------LAN N NLP-----HL Site 4101
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci -------CLR T EPP------- Site 3633
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O -------ETP L PID------- Site 3633
Naegleria.gruberi.LF4 -------LDQ S FGG-----GQ Site 4687
Saccharomyces.bayanus.IME2 SQVETKTDVT N TEQALIFAGI Site 3889
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. -------PVV K EQS------- Site 3633
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a -------PEE E TEA-----PP Site 4878
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki -------SGV K HTN-----PA Site 3633
Dictyostelium.discoideum.DYRK1..Probable.serine.th -------TDE T SQP-----PQ Site 3801
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos -------EAT N TGP-----AG Site 3819
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos -------RRL P KPP-----TG Site 3947
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d KSKTEFDFNI D TKP-----SE Site 4262
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a -------PDR E WAR-----ES Site 4543
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific -------LQP Q PAP------- Site 3633
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos -------EPR K FKP----RPK Site 3633
Aspergillus.nidulans.IME2 -------DAV D PLS----VRP Site 3633
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- D MCS------- Site 3321
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se -------EGR L RFH------- Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. -------PLE P KPS-----SS Site 4567
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep -------DVT K PVP------- Site 3633
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. --VWYDPSEV E APP------- Site 4548
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. -------ELR D PNS------- Site 3633
Penicillium.marneffei.IME2 -------LGR K MSE-----KS Site 4504
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen -------QYH D PDD------- Site 3633
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ---PYSCPED E PTS------- Site 4657
Drosophila.melanogaster.MAK -------ISP T AAT-----KA Site 4464
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - -KK-------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - EKI-------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de ----DVELSK M APPDLPHWQD Site 3636
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep -------PLP N AFS------- Site 4900
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d -----EKPLP C EPE------- Site 4893
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin --VWYDPAEV E APP------- Site 4548
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a --VWYDPAEA E APP------- Site 4550
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---------- - --L-------  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- D MSL------- Site 3321
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p -------SDK L WTT------- Site 3633
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen -------ELR C LGT------- Site 3633
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. --VWYDPAEA E APP------- Site 4872
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki -------TVV K DQA------- Site 3633
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U -------PLN K ---------- Site 4923
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ---PYSCPED E PTS------- Site 4661
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d -------SLG E RIH------- Site 3633
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. -------TVV K DQA------- Site 3633
Yarrowia.lipolytica.SSN3..Serine.threonine.protein -------EAP K VSQ------- Site 3633
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. -------EFH D ADE------- Site 3633
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ------RTAD E ATN----TGP Site 3816
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE -------PVV E AHA------- Site 3633
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH -------ELR D ERT------- Site 3633
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD -------PKT C LPD-----GK Site 4758
Candida.orthopsilosis.IME2 ---------- - --K-------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot -------NRP G PTP------- Site 3633
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str --VWYDASRG S CSS------- Site 4878
Debaryomyces.hansenii.IME2 -------PER P SNK-----MT Site 3542
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati -------ELR D PNT------- Site 3633
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin -------NND P PVS-----SD Site 3633
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE -------HNE F TQN-----RP Site 4888
Caenorhabditis.briggsae.CDK1 ---------- - ----------  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO -------PIV N GQM------- Site 3633
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de -----TAPLP A HPS------- Site 4872
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos -------KST P KPL------- Site 3947
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. -------DLE K CKE------- Site 3633
Monosiga.brevicollis.CDK1 -------DID K KAL------- Site 3633
Saccharomyces.cerevisiae.SKY1 -------DTL G MEE------- Site 3619
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP -------LYH D PND------- Site 3633
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U -------ADG F ADK------- Site 4896
Drosophila.melanogaster.GSK3..Protein.kinase.shagg -------GNH T LPN-----GR Site 4479
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. -------RFH C PSD----EWA Site 3633
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d -MDGFAERFS Q ELQ----LKI Site 3330
Dictyostelium.discoideum.CDK10..Probable.cyclin.de -------ENP F PQS------- Site 3633
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d EFDFNIDPKP S EGP----GTK Site 4174
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa -------SLH D PSD-----EP Site 3633
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep -------DLE R CKE------- Site 3633
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep -----EKPLP C EPE------- Site 4890
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac --VWYDPSEA E APP------- Site 4547
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. -------PFR D PEE------- Site 3633
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- Q EPL------- Site 3321
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri -------EGR L RYH------- Site 4784
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha --VWYDPAEV E APP------- Site 4548
Saccharomyces.cerevisiae.CDK1 ---------- - -ES-------  
Lodderomyces.elongisporus.IME2 -------ESV H AID-----KY Site 3577
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen -------QYH D PDD------- Site 3633
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un -------PFK G EPA------- Site 3633
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar EFDFNVDPKS S DGP------- Site 4300
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. -------DIV S NTG------- Site 4883
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D RTTSAKQPTT S PAE-----RK Site 4409
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U -------PLP A QRF----TPI Site 4483
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d -------SIR E VGE------- Site 3633
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen RRLGAQLPND R PLP------- Site 4805
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ---------- - ----------  
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep -------KDE G NPE------- Site 3633
Cryptococcus.neoformans.SSN3..Serine.threonine.pro -------EEG G VDT------- Site 3633
Salmo.salar.CDK1 -------DVT M PMP------- Site 3633
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d -------NRP A PTP------- Site 3633
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d -----TAPLP A HPS------- Site 4872
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi -------IQT H PVN------- Site 3633
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen -------ELR D PNV------- Site 3633
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable -------ALQ S HPE----EEP Site 4668
Aspergillus.fumigatus.IME2 -------PLR P KSS-----TS Site 4506
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan --------EE P LPT----SDV Site 3396
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha -------PLN P QMA------- Site 3633
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha -------QFR D IEE------- Site 3633
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S -------EGR L RFH------- Site 3633
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma -------PDP F QQA----LIV Site 3608
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina -------QYY D PTD------- Site 3633
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d -------SLG P RIH------- Site 3633
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. -----EKPLP C EPE------- Site 4893
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de -------SLR E ESE------- Site 3633
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S --VWYDAEEV D APA------- Site 4881
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. -------PLE E TEA-----EP Site 4876
Candida.glabrata.IME2 ELVTDEQPND R EKD-----TN Site 3487
Homo.sapiens.MAK..Serine.threonine.protein.kinase. -------VEP K PLP----DII Site 4576
Schizosaccharomyces.pombe.IME2 ----VSAPAD A VAS-----KE Site 4617
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P -------LYH D PND------- Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------D S SNH------- Site 3322
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom -----MQQLR S AHE----ATR Site 4661
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. -------SGQ G QQA------- Site 4902
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d -------SLG D RVH------- Site 3633
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d -------SFQ E DQM------- Site 3633
Branchiostoma.floridae.CDK1 ---------- - ----------  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara -------VLE M EPS------- Site 3633
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH -------ELR D PNT------- Site 3633
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD -------NDD F TRN-----KP Site 3584
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR -------ELR S PDA------- Site 3633
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. -------PPP Y IKP-----VP Site 4561
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ---------- - ----------  
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos TNTSNSVSTS P AME-----QS Site 3742
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep -------DVT K PVP------- Site 3633
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act WAPSGDCAME S PPP----APL Site 4295
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. -------QYH D PDD------- Site 3633
Lachancea.thermotolerans.SKY1 -------DTV G LEG------- Site 3619
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ---IYSFPTD E PIS------- Site 4528
Dictyostelium.discoideum.CDK1 -------DLD T SFF------- Site 3633
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. -------SLR D TED------- Site 3633
Xenopus.tropicalis.IME2 -------DVS R PTP------- Site 3633
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U FQQTFIVCPP A FQA------- Site 3592
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. -------PIV K DQA------- Site 3633
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d -------DVS R PTP----HLI Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara -------RKS P QST------- Site 3632
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. -------VLP S QLY------- Site 3633
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD -------PAE E PHF-----DR Site 4867
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos -------KTA D EGT----NTS Site 3633
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen -------ELR D PNV------- Site 3633
Drosophila.melanogaster.GSK3H..Putative.glycogen.s -------PHQ Q LPN-----GR Site 4471
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD -------EAP L PSL------- Site 3633
Encephalitozoon.cuniculi.CDK1 -------GMP L IME------- Site 3633
Saccharomyces.kluyveri.IME2 -------DDN Y MLN-----NS Site 3874
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a -------QYY D PSD------- Site 3633
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. -------ALP S QLY------- Site 3633
Cryptococcus.neoformans.IME2 LGSYGQRPPE A AAA-----DA Site 4465
Homo.sapiens.HIPK4..Homeodomain.interacting.protei -----MQQLR S AHE----TTH Site 4661
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - --S-------  
Candida.lusitaniae.IME2 -------EYN T LGK-----EM Site 3633
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom PFQQTFIVCP P AFQ------- Site 3600
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A -------PTA D VFA-----GC Site 4766
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep -------TDP L PAH------- Site 3633
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. -------SCR E DLE------- Site 3633
Gallus.gallus.CDK2 -------DVT R AVP------- Site 3633
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. -------EQR K TEK----RAL Site 3633
Homo.sapiens.CDK1 -------DLD N QIK-----KM Site 3633
Candida.albicans.CDK1 -------DND D RDH------- Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca -------PIV K DQG------- Site 3633
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a WAPSGDCAME S PPP----ALP Site 4270
Mus.musculus.ICK..Serine.threonine.protein.kinase. -------PAP P AQA----PAK Site 4567
Saccharomyces.castelli.IME2 -------DTV A SES-----MK Site 3633
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec -------CLR K ATR-----K- Site 3633
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep -------NRP G PTP------- Site 3633
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. -------DLP P RLW------- Site 3633
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly -------DLR D PAA------- Site 3633
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS -------ELN E NTY------- Site 3633
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli -------IRP G PTP------- Site 3633
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho -------SDP M PSD------- Site 3633
Homo.sapiens.HIPK2..Homeodomain.interacting.protei -------PDP F QQA----LIV Site 3606
Acyrthosiphon.pisum.CDK1 -------ASL P ETP------- Site 4920
Candida.tropicalis.CDK1 -------ETI K MMD------- Site 3633
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin -------EEP Q PTQ------- Site 3633
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G -------PGA R MPN-----GR Site 4792
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR -------PIV K EQG------- Site 3633
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de -------SLG E RIH------- Site 3633
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- - ----------  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d -------SLG P RIH------- Site 3633
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA -------QFR D IEE------- Site 3633
Candida.albicans.SSN3..Serine.threonine.protein.ki -------ELP K VNE-----NA Site 3633
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF -------EIR E MEK----RQY Site 3633
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA -------PGI K LPN------- Site 4812
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara -------PDD W PEP-----TA Site 4875
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de -----TPPYP A NPS-----EL Site 4398
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei -------PIV K DQS------- Site 3633
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U -------GKP T SYSVRVDNAL Site 3584
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d -------ETP L PID------- Site 3633
Candida.dubliniensis.IME2 -------ESI A MMD------- Site 3633
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a --VWYDPAEA E APP------- Site 4551
Aspergillus.niger.IME2 -----DAIDP L RPK----SST Site 4498
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge -------QYH D PDD------- Site 3633
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d -------KLL Q EAK-----VN Site 3411
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. -------DLP P RLW------- Site 3633
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein -------TVV K DQA------- Site 3633
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty -------QQI D QVP------- Site 3805
Schizosaccharomyces.japonicus.IME2 PKSLYGLPNH S TTT-----AY Site 4625
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. --VWFDEIEV Y APP------- Site 4884
Gallus.gallus.CDK1 ---------- - ----------  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------D F CPP------- Site 3322
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P -------ELR D PET------- Site 3633
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---------- - ----------  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. -------ELR N PDA------- Site 3633
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. -------SLH D TED------- Site 3633
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- T KFE------- Site 3321
Kluyveromyces.waltii.IME2 -------ETG G EQL-----GT Site 3890
Debaryomyces.hansenii.SKY1 -------DAL G LEN------- Site 3626
Saccharomyces.cerevisiae.IME2 ARGNVTNTEQ A LIF----AGI Site 3894
Schizosaccharomyces.japonicus.b.IME2 -------NGN E IIE-----ST Site 3374
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un -------DLQ K GKD------- Site 3633
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein -------PVV K EQS------- Site 3633
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ---IYSFPMD E PIS------- Site 4527
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep -------DLE R YKD------- Site 3633
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST -------ETK R CDT------- Site 3633
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk -------QFH D IDD------- Site 3633
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de GFIEKFIPEL R AKL----LQE Site 3403
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act --VWYDPSEV E APP------- Site 4870
Candida.albicans.IME2 -------ESI T MMD------- Site 3633
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d -------DDP Q ACS------- Site 3633
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k -------ENP Q PRD------- Site 3633
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ---QYHDPDD E PVA------- Site 4880
Kluyveromyces.lactis.IME2 -------KLP K VQK-----NN Site 3824
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina WAPSGDCAME S PPP----APP Site 4260
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. --VWYDPAEV E APP------- Site 4548
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. -------QYH D PED------- Site 3633
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. -------QYH D PDD------- Site 3633
Amphimedon.queenslandica.CDK1 ---------- - --E-------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d -------SFQ E AQI------- Site 3633
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ---------- - ----------  
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME -------ELP L PID------- Site 3633
Neurospora.crassa.IME2 -------PLR P KSS-----AS Site 4490
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME -------DSS S SGH------- Site 3633
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---------- - ----------  
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep -------KEE S DAE------- Site 3633
Hydra.magnipapillata.CDK1 -------DLN H NM-------- Site 3633
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar -----EKPLP C EPE------- Site 4891
Ashbya.gossypii.IME2 -------QET K QPP-----LS Site 3467
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi -------IQP H PGS------- Site 3633
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos -------KSV P RPL------- Site 3947
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p -------ELK L DDG------- Site 3633
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace -------KFH N PSS------- Site 3633
Schizosaccharomyces.pombe.b.IME2 -------LPP S ASK-----SN Site 4692
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a -------QYY D PSD------- Site 3633
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom PLQAGTAQFG C GDAFHQTLII Site 3576
Schizosaccharomyces.pombe.CDK1 -------DFH - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ---------- - ----------  
Saccoglossus.kowalevskii.CDK1 -------DVQ V QIP------- Site 3633
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas -------ATR G LPS-----TA Site 3261
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac --VWYDPSEA E APP------- Site 4870
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep -------PGH S LAP------- Site 3633
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable -------DTL R SHP----NSE Site 4654
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep -------SPE P SPA------- Site 3632
Yarrowia.lipolytica.IME2 -------NPH G DPP-----IL Site 3578
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil -------ESD I PVS-----EN Site 3633
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli -------DVT M PVP------- Site 3633
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K -------ELN E DLL------- Site 4905
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly -------ELR D PST------- Site 3633
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk -------ELR D PNT------- Site 3633
Species Residue at Site 2240
in 'muscle'
msaprobs

The residue for every species at site 2240 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ---QKEERVP S QPP------- Site 3784
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo -------EGR L RYH------- Site 4782
Scheffersomyces.stipitis.SKY1 -------DAL G LEN------- Site 3626
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------D F CPP------- Site 3322

Generated by PhyloBot at 02:56, November 16th 2019
Questions/Comments? help@phylobot.com