cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 2239 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 2239 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 2239 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 2239 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 --------AK E EKVQ-----K Site 3396
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD --------DV P PFLN------ Site 3396
Danio.rerio.CDK1 --------DV T MPVP------ Site 3396
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge --------SL H DISD------ Site 3396
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- D FCPP------ Site 3321
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---------- - ----------  
Candida.guilliermondii.IME2 ------YTPE K KAME-----T Site 4797
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ --------SN P RMRA-----G Site 3075
Chlamydomonas.reinhardtii.LF4 --------AE K RQKA-----L Site 4559
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g --------EL R DPNC------ Site 3396
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 --------PN P PNEK-----S Site 3191
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho --------ED P LPTS------ Site 3396
Schizosaccharomyces.octosporus.b.IME2 --------KP P ESPN-----G Site 3396
Candida.albicans.MAPK3..Extracellular.signal.regul --------LY H DPND------ Site 3396
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- - ----------  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 --------NR D DSLA-----V Site 3155
Suberites.domuncula.JNK..Stress.activated.protein. ---IWYDPAE V HAPP-----P Site 4888
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ---------- - ----------  
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci --------PL K KHT------- Site 3396
Homo.sapiens.CLK2..Dual.specificity.protein.kinase --------RL R AEPP------ Site 3396
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos --------QS R NLKP------ Site 3396
Homo.sapiens.HIPK1..Homeodomain.interacting.protei DPFQQTFIVC P PAFQ------ Site 3599
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar --------SV R EAGD------ Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 --------DF V AFNN------ Site 3396
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. --------PV V KEQS------ Site 3396
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM --------QY Y DPGD------ Site 3396
Strongylocentrotus.purpuratus.CDK1 -------VPP P RLPT------ Site 4919
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca --------NV D KHQV-----G Site 3260
Drosophila.melanogaster.CDK1 ---------- - ----------  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 --------QA N RANN------ Site 3166
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. --------DN K QIQQ-----Q Site 3236
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---------- - ----------  
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d --------SL G ERVH------ Site 3396
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. --------DL P PKLF----EL Site 3396
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ---VWYDPAE V EAPP------ Site 4547
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 --------KV Q KDAR-----N Site 3510
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ---VWYDPAE V EAPP------ Site 4547
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. --------PF R DPEE------ Site 3396
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo --------EG R LRYH------ Site 3396
Bombus.terrestris.CDK1 --------GV T LVPP------ Site 3396
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - ---S------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar --------RF A QELK-----L Site 3450
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ---VWYDPLE A EAPP------ Site 4547
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d -----DVELS K MAPPDLPHWQ Site 3633
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. --------AE T QTLA-----K Site 4750
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. --------EL R EPTT------ Site 3396
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G --------EL H DSAT------ Site 3396
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 --------TS A ALPP-----G Site 2750
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO VGSATMQPPL Q VPPQ-----Q Site 4237
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- - ----------  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl --------EG R LRYH------ Site 3396
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 --------NI R EIED------ Site 3396
Homo.sapiens.HIPK3..Homeodomain.interacting.protei --------GK P TSYSIRVDNT Site 3579
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O --------ET P LPID------ Site 3396
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d --------LA N NNLP-----H Site 4100
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci --------CL R TEPP------ Site 3396
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O --------ET P LPID------ Site 3396
Naegleria.gruberi.LF4 --------LD Q SFGG-----G Site 4686
Saccharomyces.bayanus.IME2 ASQVETKTDV T NTEQALIFAG Site 3888
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. --------PV V KEQS------ Site 3396
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a --------PE E ETEA-----P Site 4877
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki --------SG V KHTN-----P Site 3396
Dictyostelium.discoideum.DYRK1..Probable.serine.th --------TD E TSQP-----P Site 3396
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos --------EA T NTGP-----A Site 3818
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos --------RR L PKPP-----T Site 3396
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d AKSKTEFDFN I DTKP-----S Site 4261
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a --------PD R EWAR-----E Site 4542
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific --------LQ P QPAP------ Site 3396
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos --------EP R KFKP----RP Site 3396
Aspergillus.nidulans.IME2 --------DA V DPLS----VR Site 3396
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- - DMCS------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se --------EG R LRFH------ Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. --------PL E PKPS-----S Site 4566
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep --------DV T KPVP------ Site 3396
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ---VWYDPSE V EAPP------ Site 4547
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. --------EL R DPNS------ Site 3396
Penicillium.marneffei.IME2 --------LG R KMSE-----K Site 4503
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen --------QY H DPDD------ Site 3396
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ----PYSCPE D EPTS------ Site 4656
Drosophila.melanogaster.MAK --------IS P TAAT-----K Site 4463
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - --KK------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - -EKI------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de -----DVELS K MAPPDLPHWQ Site 3635
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep --------PL P NAFS------ Site 4899
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ------EKPL P CEPE------ Site 4001
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ---VWYDPAE V EAPP------ Site 4547
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ---VWYDPAE A EAPP------ Site 4549
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---------- - ---L------  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- - DMSL------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p --------SD K LWTT------ Site 3396
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen --------EL R CLGT------ Site 3396
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ---VWYDPAE A EAPP------ Site 4871
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki --------TV V KDQA------ Site 3396
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U --------PL N K--------- Site 3396
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ----PYSCPE D EPTS------ Site 4660
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d --------SL G ERIH------ Site 3396
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. --------TV V KDQA------ Site 3396
Yarrowia.lipolytica.SSN3..Serine.threonine.protein --------EA P KVSQ------ Site 3396
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. --------EF H DADE------ Site 3396
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos -------RTA D EATN----TG Site 3633
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE --------PV V EAHA------ Site 3396
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH --------EL R DERT------ Site 3396
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD --------PK T CLPD-----G Site 4757
Candida.orthopsilosis.IME2 ---------- - ---K------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot --------NR P GPTP------ Site 3396
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ---VWYDASR G SCSS------ Site 4877
Debaryomyces.hansenii.IME2 --------PE R PSNK-----M Site 3541
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati --------EL R DPNT------ Site 3396
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin --------NN D PPVS-----S Site 3396
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE --------HN E FTQN-----R Site 3396
Caenorhabditis.briggsae.CDK1 ---------- - ----------  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO --------PI V NGQM------ Site 3396
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ------TAPL P AHPS------ Site 4001
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos --------KS T PKPL------ Site 3396
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. --------DL E KCKE------ Site 3396
Monosiga.brevicollis.CDK1 --------DI D KKAL------ Site 3396
Saccharomyces.cerevisiae.SKY1 --------DT L GMEE------ Site 3396
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP --------LY H DPND------ Site 3396
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U --------AD G FADK------ Site 3396
Drosophila.melanogaster.GSK3..Protein.kinase.shagg --------GN H TLPN-----G Site 4478
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. --------RF H CPSD----EW Site 3396
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d --MDGFAERF S QELQ----LK Site 3329
Dictyostelium.discoideum.CDK10..Probable.cyclin.de --------EN P FPQS------ Site 3396
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d TEFDFNIDPK P SEGP----GT Site 4173
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa --------SL H DPSD-----E Site 3396
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep --------DL E RCKE------ Site 3396
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ------EKPL P CEPE------ Site 4001
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ---VWYDPSE A EAPP------ Site 4546
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. --------PF R DPEE------ Site 3396
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- - QEPL------  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri --------EG R LRYH------ Site 3396
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ---VWYDPAE V EAPP------ Site 4547
Saccharomyces.cerevisiae.CDK1 ---------- - --ES------  
Lodderomyces.elongisporus.IME2 --------ES V HAID-----K Site 3396
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen --------QY H DPDD------ Site 3396
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un --------PF K GEPA------ Site 3396
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar TEFDFNVDPK S SDGP------ Site 4299
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. --------DI V SNTG------ Site 3396
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ARTTSAKQPT T SPAE-----R Site 4408
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U --------PL P AQRF----TP Site 4482
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d --------SI R EVGE------ Site 3396
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen LRRLGAQLPN D RPLP------ Site 4558
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ---------- - ----------  
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep --------KD E GNPE------ Site 3396
Cryptococcus.neoformans.SSN3..Serine.threonine.pro --------EE G GVDT------ Site 3396
Salmo.salar.CDK1 --------DV T MPMP------ Site 3396
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d --------NR P APTP------ Site 3396
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ------TAPL P AHPS------ Site 4001
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi --------IQ T HPVN------ Site 3396
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen --------EL R DPNV------ Site 3396
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable --------AL Q SHPE----EE Site 4667
Aspergillus.fumigatus.IME2 --------PL R PKSS-----T Site 4505
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan ---------E E PLPT----SD Site 3322
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha --------PL N PQMA------ Site 3396
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha --------QF R DIEE------ Site 3396
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S --------EG R LRFH------ Site 3396
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma --------PD P FQQA----LI Site 3607
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina --------QY Y DPTD------ Site 3396
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d --------SL G PRIH------ Site 3396
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ------EKPL P CEPE------ Site 4001
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de --------SL R EESE------ Site 3396
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ---VWYDAEE V DAPA------ Site 4880
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. --------PL E ETEA-----E Site 4875
Candida.glabrata.IME2 EELVTDEQPN D REKD-----T Site 3486
Homo.sapiens.MAK..Serine.threonine.protein.kinase. --------VE P KPLP----DI Site 4575
Schizosaccharomyces.pombe.IME2 -----VSAPA D AVAS-----K Site 4616
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P --------LY H DPND------ Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- D SSNH------ Site 3321
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ------MQQL R SAHE----AT Site 4660
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. --------SG Q GQQA------ Site 4901
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d --------SL G DRVH------ Site 3396
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d --------SF Q EDQM------ Site 3396
Branchiostoma.floridae.CDK1 ---------- - ----------  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara --------VL E MEPS------ Site 3396
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH --------EL R DPNT------ Site 3396
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD --------ND D FTRN-----K Site 3583
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR --------EL R SPDA------ Site 3396
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. --------PP P YIKP-----V Site 4560
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ---------- - ----------  
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos GTNTSNSVST S PAME-----Q Site 3741
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep --------DV T KPVP------ Site 3396
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act PWAPSGDCAM E SPPP----AP Site 4294
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. --------QY H DPDD------ Site 3396
Lachancea.thermotolerans.SKY1 --------DT V GLEG------ Site 3396
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ----IYSFPT D EPIS------ Site 4527
Dictyostelium.discoideum.CDK1 --------DL D TSFF------ Site 3396
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. --------SL R DTED------ Site 3396
Xenopus.tropicalis.IME2 --------DV S RPTP------ Site 3396
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U PFQQTFIVCP P AFQA------ Site 3591
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. --------PI V KDQA------ Site 3396
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d --------DV S RPTP----HL Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara --------RK S PQST------ Site 3396
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. --------VL P SQLY------ Site 3396
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD --------PA E EPHF-----D Site 4866
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos --------KT A DEGT----NT Site 3396
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen --------EL R DPNV------ Site 3396
Drosophila.melanogaster.GSK3H..Putative.glycogen.s --------PH Q QLPN-----G Site 4470
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD --------EA P LPSL------ Site 3396
Encephalitozoon.cuniculi.CDK1 --------GM P LIME------ Site 3396
Saccharomyces.kluyveri.IME2 --------DD N YMLN-----N Site 3873
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a --------QY Y DPSD------ Site 3396
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. --------AL P SQLY------ Site 3396
Cryptococcus.neoformans.IME2 DLGSYGQRPP E AAAA-----D Site 4464
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ------MQQL R SAHE----TT Site 4660
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - ---S------  
Candida.lusitaniae.IME2 --------EY N TLGK-----E Site 3396
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom DPFQQTFIVC P PAFQ------ Site 3599
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A --------PT A DVFA-----G Site 4765
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep --------TD P LPAH------ Site 3396
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. --------SC R EDLE------ Site 3396
Gallus.gallus.CDK2 --------DV T RAVP------ Site 3396
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. --------EQ R KTEK----RA Site 3396
Homo.sapiens.CDK1 --------DL D NQIK-----K Site 3396
Candida.albicans.CDK1 --------DN D DRDH------ Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca --------PI V KDQG------ Site 3396
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a PWAPSGDCAM E SPPP----AL Site 4269
Mus.musculus.ICK..Serine.threonine.protein.kinase. --------PA P PAQA----PA Site 4566
Saccharomyces.castelli.IME2 --------DT V ASES-----M Site 3396
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec --------CL R KATR-----K Site 3396
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep --------NR P GPTP------ Site 3396
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. --------DL P PRLW------ Site 3396
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly --------DL R DPAA------ Site 3396
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS --------EL N ENTY------ Site 3396
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli --------IR P GPTP------ Site 3396
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho --------SD P MPSD------ Site 3396
Homo.sapiens.HIPK2..Homeodomain.interacting.protei --------PD P FQQA----LI Site 3605
Acyrthosiphon.pisum.CDK1 --------AS L PETP------ Site 4919
Candida.tropicalis.CDK1 --------ET I KMMD------ Site 3396
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin --------EE P QPTQ------ Site 3396
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G --------PG A RMPN-----G Site 4791
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR --------PI V KEQG------ Site 3396
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de --------SL G ERIH------ Site 3396
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- - ----------  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d --------SL G PRIH------ Site 3396
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA --------QF R DIEE------ Site 3396
Candida.albicans.SSN3..Serine.threonine.protein.ki --------EL P KVNE-----N Site 3396
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF --------EI R EMEK----RQ Site 3396
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA --------PG I KLPN------ Site 4811
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara --------PD D WPEP-----T Site 4874
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de ------TPPY P ANPS-----E Site 4001
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei --------PI V KDQS------ Site 3396
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U --------GK P TSYSVRVDNA Site 3583
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d --------ET P LPID------ Site 3396
Candida.dubliniensis.IME2 --------ES I AMMD------ Site 3396
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ---VWYDPAE A EAPP------ Site 4550
Aspergillus.niger.IME2 ------DAID P LRPK----SS Site 4001
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge --------QY H DPDD------ Site 3396
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d --------KL L QEAK-----V Site 3410
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. --------DL P PRLW------ Site 3396
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein --------TV V KDQA------ Site 3396
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty --------QQ I DQVP------ Site 3804
Schizosaccharomyces.japonicus.IME2 PPKSLYGLPN H STTT-----A Site 4624
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ---VWFDEIE V YAPP------ Site 4883
Gallus.gallus.CDK1 ---------- - ----------  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- D FCPP------ Site 3321
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P --------EL R DPET------ Site 3396
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---------- - ----------  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. --------EL R NPDA------ Site 3396
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. --------SL H DTED------ Site 3396
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- - TKFE------  
Kluyveromyces.waltii.IME2 --------ET G GEQL-----G Site 3396
Debaryomyces.hansenii.SKY1 --------DA L GLEN------ Site 3396
Saccharomyces.cerevisiae.IME2 DARGNVTNTE Q ALIF----AG Site 3893
Schizosaccharomyces.japonicus.b.IME2 --------NG N EIIE-----S Site 3373
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un --------DL Q KGKD------ Site 3396
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein --------PV V KEQS------ Site 3396
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ----IYSFPM D EPIS------ Site 4526
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep --------DL E RYKD------ Site 3396
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST --------ET K RCDT------ Site 3396
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk --------QF H DIDD------ Site 3396
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de DGFIEKFIPE L RAKL----LQ Site 3402
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ---VWYDPSE V EAPP------ Site 4869
Candida.albicans.IME2 --------ES I TMMD------ Site 3396
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d --------DD P QACS------ Site 3396
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k --------EN P QPRD------ Site 3396
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ----QYHDPD D EPVA------ Site 4879
Kluyveromyces.lactis.IME2 --------KL P KVQK-----N Site 3823
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina PWAPSGDCAM E SPPP----AP Site 4259
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ---VWYDPAE V EAPP------ Site 4547
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. --------QY H DPED------ Site 3396
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. --------QY H DPDD------ Site 3396
Amphimedon.queenslandica.CDK1 ---------- - ---E------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d --------SF Q EAQI------ Site 3396
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ---------- - ----------  
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME --------EL P LPID------ Site 3396
Neurospora.crassa.IME2 --------PL R PKSS-----A Site 4489
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME --------DS S SSGH------ Site 3396
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---------- - ----------  
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep --------KE E SDAE------ Site 3396
Hydra.magnipapillata.CDK1 --------DL N HNM------- Site 3396
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ------EKPL P CEPE------ Site 4001
Ashbya.gossypii.IME2 --------QE T KQPP-----L Site 3466
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi --------IQ P HPGS------ Site 3396
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos --------KS V PRPL------ Site 3396
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p --------EL K LDDG------ Site 3396
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace --------KF H NPSS------ Site 3396
Schizosaccharomyces.pombe.b.IME2 --------LP P SASK-----S Site 4691
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a --------QY Y DPSD------ Site 3396
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom IPLQAGTAQF G CGDAFHQTLI Site 3575
Schizosaccharomyces.pombe.CDK1 --------DF H ---------- Site 4923
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ---------- - ----------  
Saccoglossus.kowalevskii.CDK1 --------DV Q VQIP------ Site 3396
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas --------AT R GLPS-----T Site 3260
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ---VWYDPSE A EAPP------ Site 4869
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep --------PG H SLAP------ Site 3396
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable --------DT L RSHP----NS Site 4653
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep --------SP E PSPA------ Site 3396
Yarrowia.lipolytica.IME2 --------NP H GDPP-----I Site 3577
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil --------ES D IPVS-----E Site 3396
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli --------DV T MPVP------ Site 3396
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K --------EL N EDLL------ Site 3396
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly --------EL R DPST------ Site 3396
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk --------EL R DPNT------ Site 3396
Species Residue at Site 2239
in 'muscle'
msaprobs

The residue for every species at site 2239 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ----QKEERV P SQPP------ Site 3783
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo --------EG R LRYH------ Site 3396
Scheffersomyces.stipitis.SKY1 --------DA L GLEN------ Site 3396
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- D FCPP------ Site 3321

Generated by PhyloBot at 11:21, November 19th 2019
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