cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1943 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1943 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1943 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 1943 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 S----APLNL R ELF------- Site 3045
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD P--LFSVLTE K YKF------- Site 3064
Danio.rerio.CDK1 P--KWARQDL S KVV------- Site 3045
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge QLPPYRRQSF Q EKF------- Site 3045
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d P----ATMSL V NVV------- Site 3045
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK P----AETNW S EQV------- Site 3045
Candida.guilliermondii.IME2 G----TGIPI D EFI------- Site 3045
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ P----DYSYL K RLF------- Site 2835
Chlamydomonas.reinhardtii.LF4 K----EGSGV A KLI------- Site 3045
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g P--NVRPHTL E SVM------- Site 3045
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 P----DYMYL R QLF------- Site 3295
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 P----DYEGY R MLL------- Site 3144
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho R-NTYTNCSL I KYM------- Site 3042
Schizosaccharomyces.octosporus.b.IME2 T----RPYPL R KLL------- Site 3045
Candida.albicans.MAPK3..Extracellular.signal.regul C----KKIPF S ELF------- Site 3045
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. S--KFINADN R HLV------- Site 3090
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 P----DYDYL R SIF------- Site 3102
Suberites.domuncula.JNK..Stress.activated.protein. P--RYAGKSW K DLF------- Site 3045
Homo.sapiens.CLK3..Dual.specificity.protein.kinase E----NCKPL K SYM------- Site 3045
Aedes.aegypti.CDK1 T--QNNLTSQ V KNL------- Site 3067
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci -----RCKPL K EFM------- Site 3045
Homo.sapiens.CLK2..Dual.specificity.protein.kinase -----NCKPL R RYL------- Site 3045
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos P----DSKDL T MVL------- Site 3045
Homo.sapiens.HIPK1..Homeodomain.interacting.protei R----LKTPE E HEL------- Site 2968
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar P--E-SMEPL E MKF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 Y----KAIPL G EIL------- Site 3045
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. E--NFIHSEN R HLV------- Site 3090
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM K----PNVPW A KLF------- Site 3045
Strongylocentrotus.purpuratus.CDK1 T----PQ-DF T KIV------- Site 3045
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca P----DYSFL R HVF------- Site 3097
Drosophila.melanogaster.CDK1 S--TNQLTNQ L KNL------- Site 3067
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 D-YQQVISMF R ELF------- Site 3117
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. P----DFLYL R KLL------- Site 3195
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH P--LDRLLID K YKL------- Site 3064
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d P--CYLPQPL I NHA------- Site 3045
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. L--SSLSEAI P KLV------- Site 3075
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET P--KYAGLTF P KLF------- Site 3045
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 K----EREPL E RRY------- Site 3045
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U P--KYAGLTF P KLF------- Site 3045
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. T----PRKDF T QLF------- Site 3045
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo P-HKQPSLPV L YTL------- Site 3044
Bombus.terrestris.CDK1 E----PR-PL D EVV------- Site 3045
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 G----LFEVL V EKY------- Site 3062
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar K----EAESL D RRY------- Site 3045
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. P--KYAGYSF E KLF------- Site 3045
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d P-KKQYRRRL R EEF------- Site 3045
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. K--KGSGIPL L TAN------- Site 3052
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. N-ANAKATPW E NVF------- Site 3045
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G Y--NSKGIPW S SVF------- Site 3045
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 P----DYMYL R QLF------- Site 3295
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 P----DYAYL K RIF------- Site 2704
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO R--LKTTEEH E AET------- Site 3017
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C S--KFINADN Q HLV------- Site 3090
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl P-HKQPSLPV L YTL------- Site 3044
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 P-DPEDMEPL E LKF------- Site 3045
Homo.sapiens.HIPK3..Homeodomain.interacting.protei A-RKYIFNSL D DVA------- Site 2989
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O S--EHPYNNL R KRF------- Site 3045
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d P--QTLDRRY L GII------- Site 3074
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci E----NCKPL R RYL------- Site 3045
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O S--EHPYNNL R KRF------- Site 3045
Naegleria.gruberi.LF4 R----AGKGL K AMI------- Site 3045
Saccharomyces.bayanus.IME2 P--DVEGSSL D HLL------- Site 3045
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. E--NFIHSEN R HLV------- Site 3090
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a F----RKKDL R ILL------- Site 3045
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki T--DHPATPF K QLF------- Site 3045
Dictyostelium.discoideum.DYRK1..Probable.serine.th V--EFCKKKL S EII------- Site 3045
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos T--LRRTKEL R KDY------- Site 2983
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos P----ESREW G NAL------- Site 3045
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d P--QSLERRY L GIL------- Site 3074
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a G--SRPQQTL D ALL------- Site 3045
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific ---------- - ----------  
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos P----DSKDL T MVV------- Site 3045
Aspergillus.nidulans.IME2 P--KMAPHSM E SIL------- Site 3045
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi S-HPKDCTSN S EGW------- Site 3087
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se R-AGLRAPDT Q RLY------- Site 3042
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. I----PI-NL K TLI------- Site 3045
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep P--KWARQDF S KVV------- Site 3045
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. P--KYAGLTF P KLF------- Site 3045
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. P--QIKAHPW H KIF------- Site 3045
Penicillium.marneffei.IME2 A----PH-SM S SIL------- Site 3045
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen M----PKRNF A DVF------- Site 3045
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a E----VKRPL R KLL------- Site 3045
Drosophila.melanogaster.MAK P--DCIKVPL S SVV------- Site 3045
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH K-FSKPTKDI R SRL------- Site 3058
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr I--NPTKDLL A DLI------- Site 3059
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de P-KKQYRRRL R EEF------- Site 3045
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep S--LAKCVGI D ENS------- Site 3092
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d R--KQPYNNL K HKF------- Site 3045
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin P--KYAGLTF P KLF------- Site 3045
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a P--KYPGIKF E ELF------- Site 3045
Homo.sapiens.CLK1..Dual.specificity.protein.kinase D----EHSSA G RYV------- Site 2984
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis K--KGDSNSC E HCF------- Site 3077
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 P----DYMYL R QLF------- Site 3295
Candida.parapsilosis.IME2 D----RGLTR T QIL------- Site 3045
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p S--SFEVRYW N NLL------- Site 3035
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen P--QIKAHPW T KVF------- Site 3045
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. P--KYPGIKF E ELF------- Site 3045
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki E--RFVHSEN Q HLV------- Site 3090
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U R--CKPLKER Q HFY------- Site 3067
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a E----VKRPL R KLL------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d P--KYRAEAL L SHA------- Site 3045
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. E--RFVHSEN Q HLV------- Site 3090
Yarrowia.lipolytica.SSN3..Serine.threonine.protein P----NLEAW Y QSI------- Site 3050
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. P--KIPKKEF S LLF------- Site 3045
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos T--LRRTKEL R KDY------- Site 2983
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE E--RFIHAEN Q HLV------- Site 3090
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH P--SIKACQW R KVF------- Site 3045
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD I----KANPW P RVF------- Site 3045
Candida.orthopsilosis.IME2 D----RGFTR A QIL------- Site 3045
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot K--PFPGTPL E HIF------- Site 3045
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str Q--KYQPVPF E TLF------- Site 3045
Debaryomyces.hansenii.IME2 T----DGVQI C NLI------- Site 3045
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati P--QIKAHPW T KVF------- Site 3045
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin Y--RDNLSVW Y HSS------- Site 3050
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE S---FNLNKL A ELS------- Site 3065
Caenorhabditis.briggsae.CDK1 R----ENFLR D KFY------- Site 3048
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO E--RFVHSDN Q HLV------- Site 3090
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de K--EQAPVPL E EVL------- Site 3045
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos G--PPGSKDW A TAL------- Site 3045
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. R----PAQPI E KFV------- Site 3045
Monosiga.brevicollis.CDK1 K--KGCLNDS V KNL------- Site 3067
Saccharomyces.cerevisiae.SKY1 P--LEDVLTE K YKF------- Site 3064
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP M-TPRPGVDF K TLF------- Site 3045
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U H----AVEPL E KRL------- Site 3045
Drosophila.melanogaster.GSK3..Protein.kinase.shagg I----KSHPW Q KVF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas P----DYTYL R RLL------- Site 3298
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. L-GSRPRQTL D ALL------- Site 3045
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d K--DAEAEPL E SRY------- Site 3045
Dictyostelium.discoideum.CDK10..Probable.cyclin.de Q----PYNNL R ELV------- Site 3045
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d P--QSLERRY L GIL------- Site 3074
Ajellomyces.capsulatus.CDK1 K--REDTRKL V PGL------- Site 3067
Dictystelium.discoideum.MAPK3..Extracellular.signa Q----PKVNF A NMF------- Site 3045
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep K----SAQPI E KFV------- Site 3045
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep R--KQPYNNL K HKF------- Site 3045
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac R-PKYAGYSF E KLF------- Site 3045
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. S----PKKDF T QLF------- Site 3045
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO R--PKDFCPH L CKY------- Site 3099
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri PHKP-PSLSV L YML------- Site 3044
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha P--KYAGLTF P KLF------- Site 3045
Saccharomyces.cerevisiae.CDK1 P--QWRRKDL S QVV------- Site 3045
Lodderomyces.elongisporus.IME2 E----PGTNI H EIV------- Site 3045
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen P--QMPKRNF A DVF------- Site 3045
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un E----NCKPL R RYM------- Site 3045
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar P--QSLERRY L GIL------- Site 3074
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. P--QIRPIPL N RIF------- Site 3045
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D Q--RDRRYSL D EMM------- Site 3045
Homo.sapiens.CLK4..Dual.specificity.protein.kinase V--RRRCKPL K EFM------- Site 3045
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U R--LKTPEDH E NET------- Site 2970
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d P--E-DMETL E LKF------- Site 3045
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen P--QIKAHPW T KVF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 R----ENFLR D KFY------- Site 3048
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep P--PRGPRPV Q SVV------- Site 3045
Cryptococcus.neoformans.SSN3..Serine.threonine.pro -----PLAPW Y HAR------- Site 3051
Salmo.salar.CDK1 P--KWARQEL S KVV------- Site 3045
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d K--SFPGTPL H LIF------- Site 3045
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d K--EQVPMPL E EVL------- Site 3045
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ---------- - ----------  
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen P--QIKAHPW T KVF------- Site 3045
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable P--EVQLRAM K RLL------- Site 4593
Aspergillus.fumigatus.IME2 R--FVLVTEL E RIA------- Site 3052
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan N--TYTNCSL I KYM------- Site 3042
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha S----KCKPL R QYL------- Site 3045
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ---KMPKKDL S VLF------- Site 3045
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S R-AGPRAPNL Q SLY------- Site 3042
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma R--LKTPDDH E AET------- Site 2970
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina K----TKVAW A KLF------- Site 3045
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d P--KYKPQPL I NHA------- Site 3045
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. R--KQPYNNL K HKF------- Site 3045
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de P---QEMEPL E LKY------- Site 3045
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S R-PRYTGYSF D RLF------- Site 3045
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. M----EKRRI S TVF------- Site 3045
Candida.glabrata.IME2 V----EGSSL E KLL------- Site 3045
Homo.sapiens.MAK..Serine.threonine.protein.kinase. C----VPINL K TLI------- Site 3045
Schizosaccharomyces.pombe.IME2 M----APLDF G DLF------- Site 3045
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P C----KKIPF Q DLF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl P----AITSW S QIV------- Site 3045
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom Q-LKSSADYL A ETK------- Site 2966
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. E--APDYMYL R QLF------- Site 3292
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d P--RYLPQPL L SHA------- Site 3045
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d P---EDMETL E EKF------- Site 3045
Branchiostoma.floridae.CDK1 P----RQ-DV T KLF------- Site 3045
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara -----NCKPL R RYL------- Site 3045
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH P--QIRPQPL S RVF------- Site 3045
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD K--QTMLEDH F RIL------- Site 3067
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR P--QIKAHPW N KVF------- Site 3045
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. P--QCVPNNL K TLI------- Site 3045
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci E----NCKPL K SYM------- Site 3045
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos S--LKKTKDG K REY------- Site 2983
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep P--KWARQDF S KVV------- Site 3045
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act R----QPVPW E TVY------- Site 3045
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. L-TQMPKMNF A NVF------- Site 3045
Lachancea.thermotolerans.SKY1 P--LKDVLME K YRF------- Site 3064
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a D-MTEPHRPL T QLL------- Site 3045
Dictyostelium.discoideum.CDK1 P----GQ-PY N KIF------- Site 3045
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ---ELEKKDF A SVL------- Site 3045
Xenopus.tropicalis.IME2 P--KWVRQDF S KVV------- Site 3045
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U R----LKAPD E HEM------- Site 2968
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. E--RFVHSEN Q HLV------- Site 3090
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d -----IRQDF S KVV------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara A----RK-EM K EIV------- Site 3045
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. F-PPPKPQSL Q IVW------- Site 3045
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD S----NPRSL S DMY------- Site 3045
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos N--LKKTKDG K REY------- Site 2983
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen P--QIKAHPW T KVF------- Site 3045
Drosophila.melanogaster.GSK3H..Putative.glycogen.s L----KPHPW S KVF------- Site 3045
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD Q----PYNNL K SKF------- Site 3045
Encephalitozoon.cuniculi.CDK1 P--VWDPVDL K TIF------- Site 3045
Saccharomyces.kluyveri.IME2 V----EGVNI E VLL------- Site 3045
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci R----RCKPL K EFM------- Site 3045
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a K----NKVPW N RLF------- Site 3045
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. P--LPTPRSL H VVW------- Site 3045
Cryptococcus.neoformans.IME2 R----KPVRF R SLF------- Site 3045
Homo.sapiens.HIPK4..Homeodomain.interacting.protei Q-LKSSADYL A ETK------- Site 2966
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote G----LLEVL V EKY------- Site 3062
Candida.lusitaniae.IME2 A----IGNSI H HIL------- Site 3045
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom R----LKTPE E HEL------- Site 2968
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A S--NYANCSL V KYM------- Site 3042
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep K--ENPPIPL E EIV------- Site 3045
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. P---DGTEPL D MRF------- Site 3045
Gallus.gallus.CDK2 P--KWARQDL G KVV------- Site 3045
Emericella.nidulans.CDK1 P--KWKREDI Q NVV------- Site 3045
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. K--KGSGIPL L TTN------- Site 3052
Homo.sapiens.CDK1 K--PGSLASH V KNL------- Site 3067
Candida.albicans.CDK1 K-----KKPL S EAV------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca E--RFVHSEN Q HLV------- Site 3090
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a R----QPVPW E TVY------- Site 3045
Mus.musculus.ICK..Serine.threonine.protein.kinase. P--QCIPNNL K TLI------- Site 3045
Saccharomyces.castelli.IME2 V----EGISL D RFI------- Site 3045
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec K----HCKPL K QYM------- Site 3045
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep K--SFPGVPL Q HIF------- Site 3045
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. T--VYSSKSL R QAW------- Site 3045
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly P--QIKAHPW S KVF------- Site 3045
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS E--LHDRMSI E PQL------- Site 3065
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli K--LFPGTPL E HIF------- Site 3045
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho L-VKGQKRKV K DRL------- Site 3045
Homo.sapiens.HIPK2..Homeodomain.interacting.protei R--LKTPDDH E AET------- Site 2970
Acyrthosiphon.pisum.CDK1 E--ARLIEEF L PEL------- Site 3067
Candida.tropicalis.CDK1 P--AEPGMNI E DVV------- Site 3045
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin S--TYSTCSL A KYM------- Site 3042
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G I----KAHPW N RVF------- Site 3045
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR E--RFVHSEN Q HLV------- Site 3090
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de P--KYRAEAL L SHA------- Site 3045
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 S--KFINADN Q HLV------- Site 3090
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d P--KYKPQPL I NHA------- Site 3045
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA M----PKKDL S VLF------- Site 3045
Candida.albicans.SSN3..Serine.threonine.protein.ki -----NLSNW F KLI------- Site 3050
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF P--QKSGTGI E KLI------- Site 3045
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA K----PH-PW S KVF------- Site 3045
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara Y----PHRDF S TLF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de H----PRTLE T AFF------- Site 3048
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei E--RFVHSEN Q HLV------- Site 3090
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U R--KYIFNNL D EIV------- Site 2989
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d S--EYPYNNL R KRF------- Site 3045
Candida.dubliniensis.IME2 P--DETGTTI E EIV------- Site 3045
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a R-PKYPGIKF E ELF------- Site 3045
Aspergillus.niger.IME2 P--KMAPHSM E SIL------- Site 3045
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge M----PKMNF E DVF------- Site 3045
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d P--KNARKKY P KLN------- Site 3075
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. T--LYSSKNL R QAW------- Site 3045
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein E--RFVHSEN Q HLV------- Site 3090
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty K--APGARKL H EIL------- Site 3045
Schizosaccharomyces.japonicus.IME2 N----MPLSF H ELF------- Site 3045
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. P--RYQATPF E VLF------- Site 3045
Gallus.gallus.CDK1 K--PGSLGTH V QNL------- Site 3067
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep P-MYPATTSL V NVV------- Site 3045
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P P--QIKPHPF N KVF------- Site 3045
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE Y----TGISM T SDV------- Site 3045
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. P--QIKAHPW N KVF------- Site 3045
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ---ELEKKDF A SIL------- Site 3045
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ R--DFTKKSW T HFI------- Site 3045
Kluyveromyces.waltii.IME2 V----EGTSI E SIV------- Site 3045
Debaryomyces.hansenii.SKY1 S--LKDVLME K YKF------- Site 3064
Saccharomyces.cerevisiae.IME2 V----EGSSL D HLL------- Site 3045
Schizosaccharomyces.japonicus.b.IME2 Y----LPYPI E NLL------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un R----QPQPI E NVV------- Site 3045
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein E--NFIHSEN R HLV------- Site 3090
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a D-MTEPHKPL T QLL------- Site 3045
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep K----SAQPI E KFV------- Site 3045
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST P--NIKPITL A EIF------- Site 3045
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk P--KVQKKDF G SLL------- Site 3045
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de Q--VQHPKTA R KKY------- Site 3045
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act R-PRYAGYSF E KLF------- Site 3045
Candida.albicans.IME2 P--DESGMSI E DIV------- Site 3045
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d R----TQQPV D KFV------- Site 3045
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k L-TDQPYNNL K SKF------- Site 3045
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. A--QMPKMNF A NVF------- Site 3045
Kluyveromyces.lactis.IME2 V----EGKTI R DVL------- Site 3045
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina R----QPVPW E TVY------- Site 3045
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. P--KYAGLTF P KLF------- Site 3045
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. P--PMPQKDL S SIF------- Site 3045
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 P----DYMYL R QLF------- Site 3295
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. P--PMPQKDL S SVF------- Site 3045
Amphimedon.queenslandica.CDK1 P--RQNLQRI V KSL------- Site 3067
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d P--E-DMETL E EKF------- Site 3045
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U P--RKEMKDI V PNL------- Site 3067
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME T--EYPVSQL R KHF------- Site 3045
Neurospora.crassa.IME2 M----APHSM D TIL------- Site 3045
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME -----AITSW S QLV------- Site 3045
Dictyostelium.discoideum.DYRK2..Probable.serine.th Y--TIGTKSF K DSI------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep -----GPRPV Q SVV------- Site 3045
Hydra.magnipapillata.CDK1 R----PQ-PF Q TFL------- Site 3045
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar R--KQPYNNL K HKF------- Site 3045
Ashbya.gossypii.IME2 V--EGKDISW V MCN------- Site 3052
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ---------- - ----------  
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos G--PPGSKDW G TAL------- Site 3045
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p P--QIKPIPL S RVF------- Site 3045
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace M-LLRPQVPL D EIL------- Site 3045
Schizosaccharomyces.pombe.b.IME2 T----KPYPI Q KLL------- Site 3045
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a K----NKVPW N RLF------- Site 3045
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom A-RKYIFNSL D DIV------- Site 2989
Schizosaccharomyces.pombe.CDK1 K----RM-DL H KVV------- Site 3045
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch E----NCKPL R RYL------- Site 3045
Saccoglossus.kowalevskii.CDK1 P-----QQDL S KVV------- Site 3045
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas P----DYSYL R QLF------- Site 3096
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac R-PKYAGYSF E KLF------- Site 3045
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep S----RK-GL E EIV------- Site 3045
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable Q-RQKVPIFI T DVLLEGNMAN Site 4550
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep -----TRKGL E EIV------- Site 3045
Yarrowia.lipolytica.IME2 D--AQTGQSS N SIM------- Site 3045
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil Y--RDNLATW Y HSA------- Site 3050
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli P--KWARQDL S KVV------- Site 3045
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K Y--SIAFETL D YLT------- Site 3058
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly P--QIKPHPF N KVF------- Site 3045
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk P--QIRPQPL S RVF------- Site 3045
Species Residue at Site 1943
in 'muscle'
msaprobs

The residue for every species at site 1943 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro K--APGARKL H EIL------- Site 3045
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo P-HKQPSLPV L YTL------- Site 3044
Scheffersomyces.stipitis.SKY1 G--LKEVLME K YKF------- Site 3064
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep P-MYPATTSL V NVV------- Site 3045

Generated by PhyloBot at 04:34, November 12th 2019
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