cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 4890 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 4890 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 4890 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 4890 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 PSIFSSDILE H DFPDFCVTSL Site 2803
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ---------- - ----------  
Danio.rerio.CDK1 ---------- - ----------  
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ---SDEPVCM T PFSFDFEQHA Site 2495
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- - ----------  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---------- - ----------  
Candida.guilliermondii.IME2 TDHTNNLEID E AMNPLNPNQL Site 2496
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---------R A TSLSRAAVAR Site 2699
Chlamydomonas.reinhardtii.LF4 GGGGAVGVGG V GVNKYKANVG Site 2792
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g FNLAELSIRP N LNKAILPPHV Site 2496
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------M L KQKTHQGQPN Site 2050
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---------N A QPTANDEQNA Site 2704
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho DYQRSNPHAA Y PNPGPSTSQP Site 2526
Schizosaccharomyces.octosporus.b.IME2 RNHGAPDFQA S RSISCQAYPN Site 2773
Candida.albicans.MAPK3..Extracellular.signal.regul -----DEPIS D KIPEDFFDFD Site 2495
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- - ----------  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---------S K QNVVSNSPNA Site 2496
Suberites.domuncula.JNK..Stress.activated.protein. ------AEVH A PPPKRYDHAL Site 2241
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ---------- - ----------  
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CLK2..Dual.specificity.protein.kinase ---------- - ----------  
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.HIPK1..Homeodomain.interacting.protei SASVAPAQYQ H QFATQSYIGS Site 2903
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar KLTRKHVPGF Q YLPQLSSSNV Site 2496
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ---------- - ----------  
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ---------- - ----------  
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM -DEPVAEVPF R INMENDDISR Site 2493
Strongylocentrotus.purpuratus.CDK1 ---------- - ----------  
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---------D N ADAPMDHATH Site 2496
Drosophila.melanogaster.CDK1 ---------- - ----------  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------L N NKRLESNASQ Site 2709
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------T T TTSSSNPNQT Site 2524
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---------- - ----------  
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d -VHQLEDTAS I FSLKEIQLQK Site 2497
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. FSLVQNNFHW Y TTVLIGTQQF Site 2498
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET VNSSESLPPS S SINDISSMST Site 2495
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 SIPFVKPNRH S PSGIYNINVT Site 2734
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U VNSSESPPPS S SINDISSMST Site 2495
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. QPFDDSLEHE K LTVDEWKQHI Site 2500
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo FILEQQKGNR V PLCINPQSAA Site 2495
Bombus.terrestris.CDK1 ---------- - ----------  
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - ----------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar YLKKENKTVS E SRVPSLAAID Site 2748
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. VTDGSQAHTS S SSGDASSMST Site 2495
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d TTGASSSGAG L HWGGPTQSSA Site 2802
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. NGKVPVLRPL K CAAVNKKTDT Site 2670
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ---------T K LPSGNPLPAH Site 2495
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ---------T K LPNNKDLPED Site 2495
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------M L KQKTHQGQPN Site 2050
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------P R NSPGEAGKST Site 2684
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO SHPLPAHIQI P TQYSQFGPLS Site 2902
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- - ----------  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl FILEQQKGNR V PLCINPQSAA Site 2495
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 HHCFTETSKL Q YLPQLTGSSI Site 2496
Homo.sapiens.HIPK3..Homeodomain.interacting.protei LLPSPTIHQT Q YKPIFPPHSY Site 2903
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O SPRPPEGGLG Y SQLGDDDLKE Site 2498
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ALNRAEGAPY P DQLANKGGQN Site 2894
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O SPRPPEGGLG Y SQLGDDDLKE Site 2498
Naegleria.gruberi.LF4 TYNNFQSNKA P PIFQNNVHAS Site 2721
Saccharomyces.bayanus.IME2 LGDSFNSMPD F TPRNFLIPTL Site 2718
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ---------- - ----------  
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a EAPPYDHSLD E ADQSLEQWKR Site 2261
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki LAQVQQQLLQ K QQQQQQQQQQ Site 2496
Dictyostelium.discoideum.DYRK1..Probable.serine.th ---------- - ----------  
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos ---------- - ----------  
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d PKGRPALQLP G SSLLRYNGWK Site 2873
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a MFGISVSQGA Q GAARAALGGY Site 2730
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific NELVALQSPN S IARAASNLAM Site 2496
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos ---------- - ----------  
Aspergillus.nidulans.IME2 NRRLPLSDEK S ATSATRQWPT Site 2770
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se QFVMDRPALY G VALCINPQSA Site 2495
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. TGRGQFSGRT Y NPTAKNLNIV Site 2763
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ---------- - ----------  
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. VNSSESLPPS S SVNDISSMST Site 2495
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. RLPNGRFLPP L FNFKSHELKG Site 2497
Penicillium.marneffei.IME2 PVRQRDVTKI P EDTSSRQWPT Site 2773
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ---------- - -DEPEADPYD  
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a SRALKLCTKP E DLPDNKLGDL Site 2766
Drosophila.melanogaster.MAK AQKEKPAVAS S FPWDESNRTE Site 2767
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - ----------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - ----------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de PGTTGANSSG T TLQWGGPAQS Site 2800
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ---------- - -------LPN  
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ---------- - --CEPELMPT  
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin VNSSESLPPS S SVNDISSMST Site 2495
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a VSSNATPSQS S SINDISSMST Site 2493
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---------- - ----------  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------M L KQKTHQGQPN Site 2050
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p TTSPFLNQPI H YPERRISEDD Site 2496
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen LIPPHLRSPA G TTTLTPSSQA Site 2496
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. DAQLEEREHA I EEWKELIYKE Site 2495
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ---------- - ----------  
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ---------- - ----------  
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a SRALKLCTKP E DLPENKLGDL Site 2766
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d -HKLPDTTSI F ALKEVQLQKE Site 2496
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ---------- - ----------  
Yarrowia.lipolytica.SSN3..Serine.threonine.protein ERQEYKYPPR R ISCEDSDIKT Site 2496
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. LSVEEWRKYT Y EEVINYTPIL Site 2495
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ---------- - ----------  
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ---------- - ----------  
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ---------- - RTRLPNGNAL  
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD PSTTSSSSST P NSIPVQSPST Site 2669
Candida.orthopsilosis.IME2 ---------- - ----------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot TPGPQLPRPN S STEALKEKEN Site 2496
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str SSAGPSTILL V DGEHTVEEWR Site 2496
Debaryomyces.hansenii.IME2 TNNDSVNNTE Q YIPNNLAALK Site 2733
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ------TRLP N GRSLPPLFNW Site 2495
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin IGGLGVNRRI L AAAAAAAAAV Site 2495
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE --------FT Q NRPSVAKLKE Site 2242
Caenorhabditis.briggsae.CDK1 ---------- - ----------  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ---------- - ----------  
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de PQRPGGPAPK A HPGPPHVHDF Site 2496
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ---------- - ----------  
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ---------- - ----------  
Monosiga.brevicollis.CDK1 ---------- - ----------  
Saccharomyces.cerevisiae.SKY1 ---------- - ----------  
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP -----EPVAA P LEDDFFDFDR Site 2496
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ---------- - -----FADKR  
Drosophila.melanogaster.GSK3..Protein.kinase.shagg AGGANAAVAG G AGGGGGAGAA Site 2716
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------D W TCVYASEKDK Site 2041
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. MFSTSALQGA Q GGARALLGGY Site 2733
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d LSESRIPSLA A IDLHVSSVAS Site 2741
Dictyostelium.discoideum.CDK10..Probable.cyclin.de NNNFNNFVQN N QTNQNNQTNQ Site 2496
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d SCPTQQSGFS F FVRHVMREAL Site 2903
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa PYYTDLNNPN F NLSRIQSSSE Site 2499
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ---------- - ----------  
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ---------- C EPELMPTFPH Site 2240
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac INGSQHPSSS S SVNDVSSMST Site 2496
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. PFDDALEHEK L SVDEWKQHIY Site 2496
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- - ----------  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri HRFITDQQQG K RPPLCINPHS Site 2495
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha VNSSESLPPS S SANDISSMST Site 2495
Saccharomyces.cerevisiae.CDK1 ---------- - ----------  
Lodderomyces.elongisporus.IME2 FKSDKSKEPR S INEFKRDYAQ Site 2709
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen EPEAEPFDQS F ESRELDIEEW Site 2496
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un ---------- - ----------  
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar LPSQPAKPAF S EVRIHPMSQS Site 2839
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ---SNTGSDS N LSLIDSLPLL Site 2495
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D EELPVHHHKA C RHRHHKPNHH Site 2868
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U SPSLHPSQYQ A QFAHQTYIPA Site 2789
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d RQSRKHLTGL Q YLPQLTSSRI Site 2496
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen RSPAGPASPL T TSYNPSSQAL Site 2496
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ---------- - ----------  
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---------- - ----------  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro EDNGDAKMGS L PQSMAGGRLP Site 2496
Salmo.salar.CDK1 ---------- - ----------  
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d PGNLLPRPNC S IEALKEQQNL Site 2492
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d PQRLGGPAPK A HPGPPHIHDF Site 2496
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi GQLVGLNSPN S ILKAAKTLYE Site 2496
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen LIPPHARIQA A ASPPANATAA Site 2496
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable KALLQEIKER F TSSLVSDSSA Site 2746
Aspergillus.fumigatus.IME2 VSFGQQDSTP C RRDEKIDHAS Site 2762
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan DYQRSNPHAA Y QNPGPSTSLP Site 2526
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ---------- - ----------  
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha QSYDDSLERE K LSIEEWKKHI Site 2500
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S QFVMDRPALY G VALCINPQSA Site 2495
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma SPTIHPSQYP A QFAHQTYISA Site 2903
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina --DEPVAEEP F TFAMELDDLP Site 2496
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d -HALPESVSI F SLKEIQLQKD Site 2496
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ---------- - --CEPELMPT  
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de TRQPRKHLPP G YLPQLASSTV Site 2496
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S VDAPAPEPYD H SVDEREHTVE Site 2494
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. EPYDQTFEGV E LETSEWKSND Site 2263
Candida.glabrata.IME2 SDNLNYNIFE N NSELRSPNTN Site 2755
Homo.sapiens.MAK..Serine.threonine.protein.kinase. TGRGQFSGRT Y NPTAKNLNIV Site 2763
Schizosaccharomyces.pombe.IME2 AISSTFLDRD F PDFGITSLAG Site 2791
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P -----DEPVS E KIPEDFFDFD Site 2495
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- - ----------  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom WLSEPEWTLE G IRGSRAQGLP Site 2759
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------Q K AAQQAASSSG Site 2066
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d -VHQLHDTAS I FSLKEIQLQK Site 2497
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d RSEGRSRRRQ Q NQLLPLIPGS Site 2495
Branchiostoma.floridae.CDK1 ---------- - ----------  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara ---------- - ----------  
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH NFSPFELSIR P DLNQKLIPSH Site 2495
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD SGFSSMPVTL S MPEIKSNAKQ Site 2525
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ---------- - -ARLPSGRAL  
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. MRPHPGRPFF H TQPRSTPGLI Site 2781
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ---------- - ----------  
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos ---------- - ----------  
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ---------- - ----------  
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act LSASLLADWL E GHGMNPADIE Site 2780
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. EPVADPYDQS F ESRDLLIDEW Site 2496
Lachancea.thermotolerans.SKY1 ---------- - ----------  
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a GTPQFHSPVG S PLKSIQATLT Site 2814
Dictyostelium.discoideum.CDK1 ---------- - ----------  
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. QKYDDSFDDV D RTLEEWKRVT Site 2500
Xenopus.tropicalis.IME2 ---------- - ----------  
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U SANVASAQYP H QFAAQSYIGA Site 2903
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ---------- - ----------  
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---------- - ----------  
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ---------- - ----------  
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. -QLYQLPDEE S LFAVSGVKLK Site 2496
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD DGQKFPIAEY R NRLYNDIIKK Site 2496
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen LIPPHARIQA A ASTPTNATAA Site 2496
Drosophila.melanogaster.GSK3H..Putative.glycogen.s EEDVGDENDY D YDDGGQCNST Site 2719
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ----SLNSEM P DFPNYKSRQN Site 2495
Encephalitozoon.cuniculi.CDK1 ---------- - ----------  
Saccharomyces.kluyveri.IME2 DSGGSQIPRG F MVPLISDNDT Site 2745
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a ----DEPIAE A PFKFDMELDD Site 2496
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. -QLYQLPDEE S LFTVSGVRLK Site 2496
Cryptococcus.neoformans.IME2 DKRTTSASSA S LQYQQSAQTL Site 2802
Homo.sapiens.HIPK4..Homeodomain.interacting.protei LSEPDCTLES V RGPRAQGLPP Site 2760
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - ----------  
Candida.lusitaniae.IME2 SDMDSDRSKS S AVGKENVDAF Site 2682
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom SASVAPAQYQ H QFATQSYIGS Site 2903
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A QDYQVQQAQQ A AAAAAAAQQQ Site 2701
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep PIPQRGGKHS R QRMQPPHEFT Site 2496
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. HEKAPRRRTQ G LQYLPQLASS Site 2495
Gallus.gallus.CDK2 ---------- - ----------  
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. TNGRVPVLRP L KCIPASKKTD Site 2669
Homo.sapiens.CDK1 ---------- - ----------  
Candida.albicans.CDK1 ---------- - ----------  
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ---------- - ----------  
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a LSASLLADWL E GHGMNPADIE Site 2780
Mus.musculus.ICK..Serine.threonine.protein.kinase. VRPHPGRPFF H TQPRSTPGLI Site 2781
Saccharomyces.castelli.IME2 GNTSLPFPDV A PRTFEIPHLG Site 2760
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ---------- - ----------  
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep PGCQLPRPNC P VEALKEPANP Site 2495
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. LWELTDMSSI F TVPNVRLQPE Site 2496
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ARTPDGKPLP P LFDFTEDELR Site 2497
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS ---------- - NTYLLDGEST  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli TPGPQLPRPN S STEALKEKEN Site 2495
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho STHLTSMFEY L APPRRKGSQI Site 2495
Homo.sapiens.HIPK2..Homeodomain.interacting.protei SPTIHPSQYP A QFAHQTYISA Site 2903
Acyrthosiphon.pisum.CDK1 ---------- - ----------  
Candida.tropicalis.CDK1 ESEKEPRSVG V NGTSGDKKKS Site 2702
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin RLSGAGNQQD F HHQQQQQQQQ Site 2517
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G STSSTATSQD H AHSSTSGNHY Site 2497
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ---------- - ----------  
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de -HKLPDTTSI F ALKEIQLQKE Site 2496
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- - ----------  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d -HALPESVSI F SLKEIQLQKD Site 2496
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA QAYDDSLEHE K LSIEEWKKHI Site 2500
Candida.albicans.SSN3..Serine.threonine.protein.ki VQIQQVHQMQ Q QIHSQQLQSH Site 2668
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF YKSKPAARGS V RERMEPPSGV Site 2712
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA PSLRTALIPP H VSQNSSSSTA Site 2496
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara AYDDSYDNAT L PLEEWKRLSF Site 2264
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de IARQSANQKT N EQHPSSTSLH Site 2739
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ---------- - ----------  
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U LLPSPTIHQT Q FKPIFPSHSY Site 2903
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d SPRPPEGGLG Y SQLGDDDLKE Site 2498
Candida.dubliniensis.IME2 RESEMEPRRA G NGTSDLKKKQ Site 2701
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a VSSKATPSQS S SINDISSMST Site 2496
Aspergillus.niger.IME2 RRLPLAEEKT D ANTSRQWPTP Site 2773
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge EPIAEPYDQS F ESRELDIEEW Site 2496
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d RESKKTESSK I PTLLNVDQNQ Site 2762
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. LWELTDMSSI F TVPNVRLQPE Site 2496
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ---------- - ----------  
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty ---------- - ----------  
Schizosaccharomyces.japonicus.IME2 SSKPSIKSED L LNPDTFFTEG Site 2757
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. EIEVYAPPPL P YDHNMDVEQN Site 2259
Gallus.gallus.CDK1 ---------- - ----------  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- - ----------  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P RDLPELFNFT R HVPPHQRSVL Site 2497
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---------- - ----------  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ---------A R LPSGRPLPTL Site 2496
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. QKYDDSFDDV D RTLDEWKRVT Site 2500
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- - ----------  
Kluyveromyces.waltii.IME2 MSVDSSSSNR I PRSFAVPRIS Site 2734
Debaryomyces.hansenii.SKY1 ---------- - ----------  
Saccharomyces.cerevisiae.IME2 LGDSFNSMPD F TPRNFLIPTL Site 2718
Schizosaccharomyces.japonicus.b.IME2 NSATKSIYYT P GFPSNQETPI Site 2792
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ---------- - ----------  
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ---------- - ----------  
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a GIPQFHSPVG S PLKSIQATLT Site 2814
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ---------- - ----------  
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST YVKAQNLRIF D FDVETELGHV Site 2496
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ETEAEPYDDS F DNVNLPLEEW Site 2496
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ESKKTDSSKI P TLLSMDPNQE Site 2769
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act QLDEREHSVE E WKELIYKEVL Site 2496
Candida.albicans.IME2 RESEMEPRRA G NEAHDLKKKS Site 2701
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ---------- - ----------  
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ---------- - ----------  
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. EPVADPYDQS F ESRDLLIDEW Site 2496
Kluyveromyces.lactis.IME2 RNLLERAVQQ R VLDCLLDPSE Site 2768
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina LSASLLADWL E GHGMNPADIE Site 2780
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. VNSSESLPPS S AVNDISSMST Site 2495
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. EPYDESVEAK E RTLEEWKELT Site 2500
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------M L KQKTHQGQPN Site 2050
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. EPYDESVEAK E RTLEEWKELT Site 2500
Amphimedon.queenslandica.CDK1 ---------- - ----------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ---------- - ---------A  
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ---------- - ----------  
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME SSGIITGNKK S HGAGGSSAST Site 2670
Neurospora.crassa.IME2 ALTPQSLEPK K RSSEYKWPTP Site 2786
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---------- - ----------  
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---------- - ----------  
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---------- - ----------  
Hydra.magnipapillata.CDK1 ---------- - ----------  
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ---------- - CEPELMPTFP  
Ashbya.gossypii.IME2 DSHSQIPRDF I MEPTTIPQHD Site 2775
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi GQLVGLNSPN S ILKTAKTLYE Site 2496
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ---------- - ----------  
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p -DDGKINQIT T DLKLLEFDEN Site 2496
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace GLVLALAHTH R CHIHRCHTRK Site 2744
Schizosaccharomyces.pombe.b.IME2 LLQKSGMEMT S VLEYSTPNPA Site 2729
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ----DEPIAE A PFKFDMELDD Site 2495
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom LLPSPTIHQT Q YKPIFPPHSY Site 2903
Schizosaccharomyces.pombe.CDK1 ---------- - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ---------- - ----------  
Saccoglossus.kowalevskii.CDK1 ---------- - ----------  
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---------V S SSDLTGRQDT Site 2496
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac QLDEREHTIE E WKELIYKEVM Site 2505
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ---------- - ----------  
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ELISYADEIL Q VLEANAQPGL Site 2761
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ---------- - ----------  
Yarrowia.lipolytica.IME2 LDKGNVWVRS E ELECPVYPGL Site 2772
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil AGAAANALGG L GVNRRILAAA Site 2496
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ---------- - ----------  
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K ---------- - ----------  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ELSIAPQLNH K LVPSHMRPVL Site 2497
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk NFSPFELSIR P DLNQKLIPSH Site 2495
Species Residue at Site 4890
in 'msaprobs'
muscle

The residue for every species at site 4890 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ---------- - ----------  
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo FILEQQKGNR V PLCINPQSAA Site 2495
Scheffersomyces.stipitis.SKY1 ---------- - ----------  
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- - ----------  

Generated by PhyloBot at 15:13, December 15th 2019
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