cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 4889 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 4889 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 4889 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 4889 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 KPSIFSSDIL E HDFPDFCVTS Site 2802
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ---------- - ----------  
Danio.rerio.CDK1 ---------- - ----------  
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ----SDEPVC M TPFSFDFEQH Site 2494
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- - ----------  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---------- - ----------  
Candida.guilliermondii.IME2 RTDHTNNLEI D EAMNPLNPNQ Site 2495
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---------- R ATSLSRAAVA Site 2698
Chlamydomonas.reinhardtii.LF4 GGGGGAVGVG G VGVNKYKANV Site 2791
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g NFNLAELSIR P NLNKAILPPH Site 2495
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- M LKQKTHQGQP Site 2049
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---------- N AQPTANDEQN Site 2703
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho SDYQRSNPHA A YPNPGPSTSQ Site 2525
Schizosaccharomyces.octosporus.b.IME2 RRNHGAPDFQ A SRSISCQAYP Site 2772
Candida.albicans.MAPK3..Extracellular.signal.regul ------DEPI S DKIPEDFFDF Site 2494
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- - ----------  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---------- S KQNVVSNSPN Site 2495
Suberites.domuncula.JNK..Stress.activated.protein. -------AEV H APPPKRYDHA Site 2240
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ---------- - ----------  
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CLK2..Dual.specificity.protein.kinase ---------- - ----------  
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.HIPK1..Homeodomain.interacting.protei TSASVAPAQY Q HQFATQSYIG Site 2902
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar AKLTRKHVPG F QYLPQLSSSN Site 2495
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ---------- - ----------  
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ---------- - ----------  
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM --DEPVAEVP F RINMENDDIS Site 2492
Strongylocentrotus.purpuratus.CDK1 ---------- - ----------  
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---------- D NADAPMDHAT Site 2495
Drosophila.melanogaster.CDK1 ---------- - ----------  
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------- L NNKRLESNAS Site 2708
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- T TTTSSSNPNQ Site 2523
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---------- - ----------  
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d --VHQLEDTA S IFSLKEIQLQ Site 2496
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. QFSLVQNNFH W YTTVLIGTQQ Site 2497
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET AVNSSESLPP S SSINDISSMS Site 2494
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 CSIPFVKPNR H SPSGIYNINV Site 2733
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U AVNSSESPPP S SSINDISSMS Site 2494
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. QQPFDDSLEH E KLTVDEWKQH Site 2499
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo QFILEQQKGN R VPLCINPQSA Site 2494
Bombus.terrestris.CDK1 ---------- - ----------  
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - ----------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar RYLKKENKTV S ESRVPSLAAI Site 2747
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. AVTDGSQAHT S SSSGDASSMS Site 2494
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d GTTGASSSGA G LHWGGPTQSS Site 2801
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ANGKVPVLRP L KCAAVNKKTD Site 2669
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ---------- T KLPSGNPLPA Site 2243
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ---------- T KLPNNKDLPE Site 2243
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- M LKQKTHQGQP Site 2049
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- P RNSPGEAGKS Site 2683
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO PSHPLPAHIQ I PTQYSQFGPL Site 2901
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- - ----------  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl QFILEQQKGN R VPLCINPQSA Site 2494
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 KHHCFTETSK L QYLPQLTGSS Site 2495
Homo.sapiens.HIPK3..Homeodomain.interacting.protei RLLPSPTIHQ T QYKPIFPPHS Site 2902
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O TSPRPPEGGL G YSQLGDDDLK Site 2497
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d SALNRAEGAP Y PDQLANKGGQ Site 2893
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O TSPRPPEGGL G YSQLGDDDLK Site 2497
Naegleria.gruberi.LF4 TTYNNFQSNK A PPIFQNNVHA Site 2720
Saccharomyces.bayanus.IME2 SLGDSFNSMP D FTPRNFLIPT Site 2717
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ---------- - ----------  
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a TEAPPYDHSL D EADQSLEQWK Site 2260
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki VLAQVQQQLL Q KQQQQQQQQQ Site 2495
Dictyostelium.discoideum.DYRK1..Probable.serine.th ---------- - ----------  
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos ---------- - ----------  
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d TPKGRPALQL P GSSLLRYNGW Site 2872
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a RMFGISVSQG A QGAARAALGG Site 2729
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific LNELVALQSP N SIARAASNLA Site 2495
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos ---------- - ----------  
Aspergillus.nidulans.IME2 PNRRLPLSDE K SATSATRQWP Site 2769
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se YQFVMDRPAL Y GVALCINPQS Site 2494
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. KTGRGQFSGR T YNPTAKNLNI Site 2762
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ---------- - ----------  
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. AVNSSESLPP S SSVNDISSMS Site 2494
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. SRLPNGRFLP P LFNFKSHELK Site 2496
Penicillium.marneffei.IME2 TPVRQRDVTK I PEDTSSRQWP Site 2772
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ---------- - --DEPEADPY  
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ISRALKLCTK P EDLPDNKLGD Site 2765
Drosophila.melanogaster.MAK NAQKEKPAVA S SFPWDESNRT Site 2766
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - ----------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - ----------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de GPGTTGANSS G TTLQWGGPAQ Site 2799
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ---------- - --------LP  
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ---------- - ---CEPELMP  
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin AVNSSESLPP S SSVNDISSMS Site 2494
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a AVSSNATPSQ S SSINDISSMS Site 2492
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---------- - ----------  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- M LKQKTHQGQP Site 2049
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p WTTSPFLNQP I HYPERRISED Site 2495
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ILIPPHLRSP A GTTTLTPSSQ Site 2495
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. YDAQLEEREH A IEEWKELIYK Site 2494
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ---------- - ----------  
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ---------- - ----------  
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ISRALKLCTK P EDLPENKLGD Site 2765
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d --HKLPDTTS I FALKEVQLQK Site 2495
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ---------- - ----------  
Yarrowia.lipolytica.SSN3..Serine.threonine.protein FERQEYKYPP R RISCEDSDIK Site 2495
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. KLSVEEWRKY T YEEVINYTPI Site 2494
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ---------- - ----------  
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ---------- - ----------  
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ---------- - -RTRLPNGNA  
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD SPSTTSSSSS T PNSIPVQSPS Site 2668
Candida.orthopsilosis.IME2 ---------- - ----------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot -TPGPQLPRP N SSTEALKEKE Site 2495
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str CSSAGPSTIL L VDGEHTVEEW Site 2495
Debaryomyces.hansenii.IME2 ITNNDSVNNT E QYIPNNLAAL Site 2732
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati -------TRL P NGRSLPPLFN Site 2494
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin SIGGLGVNRR I LAAAAAAAAA Site 2494
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE ---------F T QNRPSVAKLK Site 2241
Caenorhabditis.briggsae.CDK1 ---------- - ----------  
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ---------- - ----------  
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de IPQRPGGPAP K AHPGPPHVHD Site 2495
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ---------- - ----------  
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ---------- - ----------  
Monosiga.brevicollis.CDK1 ---------- - ----------  
Saccharomyces.cerevisiae.SKY1 ---------- - ----------  
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ------EPVA A PLEDDFFDFD Site 2495
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ---------- - ------FADK  
Drosophila.melanogaster.GSK3..Protein.kinase.shagg AAGGANAAVA G GAGGGGGAGA Site 2715
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- D WTCVYASEKD Site 2040
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. RMFSTSALQG A QGGARALLGG Site 2732
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d CLSESRIPSL A AIDLHVSSVA Site 2740
Dictyostelium.discoideum.CDK10..Probable.cyclin.de QNNNFNNFVQ N NQTNQNNQTN Site 2495
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d FSCPTQQSGF S FFVRHVMREA Site 2902
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa APYYTDLNNP N FNLSRIQSSS Site 2498
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ---------- - ----------  
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ---------- - CEPELMPTFP  
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac VINGSQHPSS S SSVNDVSSMS Site 2495
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. QPFDDALEHE K LSVDEWKQHI Site 2495
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- - ----------  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri VHRFITDQQQ G KRPPLCINPH Site 2494
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha AVNSSESLPP S SSANDISSMS Site 2494
Saccharomyces.cerevisiae.CDK1 ---------- - ----------  
Lodderomyces.elongisporus.IME2 KFKSDKSKEP R SINEFKRDYA Site 2708
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen DEPEAEPFDQ S FESRELDIEE Site 2495
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un ---------- - ----------  
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar PLPSQPAKPA F SEVRIHPMSQ Site 2838
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ----SNTGSD S NLSLIDSLPL Site 2494
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D QEELPVHHHK A CRHRHHKPNH Site 2867
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U PSPSLHPSQY Q AQFAHQTYIP Site 2788
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d LRQSRKHLTG L QYLPQLTSSR Site 2495
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen LRSPAGPASP L TTSYNPSSQA Site 2495
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ---------- - ----------  
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---------- - ----------  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro HEDNGDAKMG S LPQSMAGGRL Site 2495
Salmo.salar.CDK1 ---------- - ----------  
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d TPGNLLPRPN C SIEALKEQQN Site 2491
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d IPQRLGGPAP K AHPGPPHIHD Site 2495
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi LGQLVGLNSP N SILKAAKTLY Site 2495
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ILIPPHARIQ A AASPPANATA Site 2495
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable MKALLQEIKE R FTSSLVSDSS Site 2745
Aspergillus.fumigatus.IME2 GVSFGQQDST P CRRDEKIDHA Site 2761
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan SDYQRSNPHA A YQNPGPSTSL Site 2525
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ---------- - ----------  
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha QQSYDDSLER E KLSIEEWKKH Site 2499
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S YQFVMDRPAL Y GVALCINPQS Site 2494
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma PSPTIHPSQY P AQFAHQTYIS Site 2902
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina ---DEPVAEE P FTFAMELDDL Site 2495
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d --HALPESVS I FSLKEIQLQK Site 2495
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ---------- - ---CEPELMP  
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de RTRQPRKHLP P GYLPQLASST Site 2495
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S EVDAPAPEPY D HSVDEREHTV Site 2493
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. AEPYDQTFEG V ELETSEWKSN Site 2262
Candida.glabrata.IME2 GSDNLNYNIF E NNSELRSPNT Site 2754
Homo.sapiens.MAK..Serine.threonine.protein.kinase. KTGRGQFSGR T YNPTAKNLNI Site 2762
Schizosaccharomyces.pombe.IME2 SAISSTFLDR D FPDFGITSLA Site 2790
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ------DEPV S EKIPEDFFDF Site 2494
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- - ----------  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom EWLSEPEWTL E GIRGSRAQGL Site 2758
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- Q KAAQQAASSS Site 2065
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d --VHQLHDTA S IFSLKEIQLQ Site 2496
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ARSEGRSRRR Q QNQLLPLIPG Site 2494
Branchiostoma.floridae.CDK1 ---------- - ----------  
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara ---------- - ----------  
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH FNFSPFELSI R PDLNQKLIPS Site 2494
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD NSGFSSMPVT L SMPEIKSNAK Site 2524
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ---------- - --ARLPSGRA  
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. AMRPHPGRPF F HTQPRSTPGL Site 2780
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ---------- - ----------  
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos ---------- - ----------  
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ---------- - ----------  
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act SLSASLLADW L EGHGMNPADI Site 2779
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. DEPVADPYDQ S FESRDLLIDE Site 2495
Lachancea.thermotolerans.SKY1 ---------- - ----------  
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a IGTPQFHSPV G SPLKSIQATL Site 2813
Dictyostelium.discoideum.CDK1 ---------- - ----------  
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. AQKYDDSFDD V DRTLEEWKRV Site 2499
Xenopus.tropicalis.IME2 ---------- - ----------  
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U TSANVASAQY P HQFAAQSYIG Site 2902
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ---------- - ----------  
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---------- - ----------  
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ---------- - ----------  
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. --QLYQLPDE E SLFAVSGVKL Site 2495
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD DDGQKFPIAE Y RNRLYNDIIK Site 2495
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos ---------- - ----------  
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ILIPPHARIQ A AASTPTNATA Site 2495
Drosophila.melanogaster.GSK3H..Putative.glycogen.s LEEDVGDEND Y DYDDGGQCNS Site 2718
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD -----SLNSE M PDFPNYKSRQ Site 2494
Encephalitozoon.cuniculi.CDK1 ---------- - ----------  
Saccharomyces.kluyveri.IME2 MDSGGSQIPR G FMVPLISDND Site 2744
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a -----DEPIA E APFKFDMELD Site 2495
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. --QLYQLPDE E SLFTVSGVRL Site 2495
Cryptococcus.neoformans.IME2 RDKRTTSASS A SLQYQQSAQT Site 2801
Homo.sapiens.HIPK4..Homeodomain.interacting.protei WLSEPDCTLE S VRGPRAQGLP Site 2759
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - ----------  
Candida.lusitaniae.IME2 DSDMDSDRSK S SAVGKENVDA Site 2681
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom TSASVAPAQY Q HQFATQSYIG Site 2902
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A QQDYQVQQAQ Q AAAAAAAAQQ Site 2700
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep LPIPQRGGKH S RQRMQPPHEF Site 2495
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. RHEKAPRRRT Q GLQYLPQLAS Site 2494
Gallus.gallus.CDK2 ---------- - ----------  
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. GTNGRVPVLR P LKCIPASKKT Site 2668
Homo.sapiens.CDK1 ---------- - ----------  
Candida.albicans.CDK1 ---------- - ----------  
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ---------- - ----------  
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a SLSASLLADW L EGHGMNPADI Site 2779
Mus.musculus.ICK..Serine.threonine.protein.kinase. AVRPHPGRPF F HTQPRSTPGL Site 2780
Saccharomyces.castelli.IME2 AGNTSLPFPD V APRTFEIPHL Site 2759
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ---------- - ----------  
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep TPGCQLPRPN C PVEALKEPAN Site 2494
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. RLWELTDMSS I FTVPNVRLQP Site 2495
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly -ARTPDGKPL P PLFDFTEDEL Site 2496
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS ---------- - -NTYLLDGES  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli -TPGPQLPRP N SSTEALKEKE Site 2494
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho LSTHLTSMFE Y LAPPRRKGSQ Site 2494
Homo.sapiens.HIPK2..Homeodomain.interacting.protei PSPTIHPSQY P AQFAHQTYIS Site 2902
Acyrthosiphon.pisum.CDK1 ---------- - ----------  
Candida.tropicalis.CDK1 RESEKEPRSV G VNGTSGDKKK Site 2701
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin VRLSGAGNQQ D FHHQQQQQQQ Site 2516
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G SSTSSTATSQ D HAHSSTSGNH Site 2496
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ---------- - ----------  
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de --HKLPDTTS I FALKEIQLQK Site 2495
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- - ----------  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d --HALPESVS I FSLKEIQLQK Site 2495
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA QQAYDDSLEH E KLSIEEWKKH Site 2499
Candida.albicans.SSN3..Serine.threonine.protein.ki NVQIQQVHQM Q QQIHSQQLQS Site 2530
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF SYKSKPAARG S VRERMEPPSG Site 2711
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA KPSLRTALIP P HVSQNSSSST Site 2495
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara TAYDDSYDNA T LPLEEWKRLS Site 2263
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de SIARQSANQK T NEQHPSSTSL Site 2738
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ---------- - ----------  
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U RLLPSPTIHQ T QFKPIFPSHS Site 2902
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d TSPRPPEGGL G YSQLGDDDLK Site 2497
Candida.dubliniensis.IME2 TRESEMEPRR A GNGTSDLKKK Site 2700
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a AVSSKATPSQ S SSINDISSMS Site 2495
Aspergillus.niger.IME2 CRRLPLAEEK T DANTSRQWPT Site 2772
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge DEPIAEPYDQ S FESRELDIEE Site 2495
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d KRESKKTESS K IPTLLNVDQN Site 2761
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. RLWELTDMSS I FTVPNVRLQP Site 2495
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ---------- - ----------  
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty ---------- - ----------  
Schizosaccharomyces.japonicus.IME2 SSSKPSIKSE D LLNPDTFFTE Site 2756
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. -EIEVYAPPP L PYDHNMDVEQ Site 2258
Gallus.gallus.CDK1 ---------- - ----------  
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- - ----------  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P LRDLPELFNF T RHVPPHQRSV Site 2496
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---------- - ----------  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ---------- A RLPSGRPLPT Site 2243
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. VQKYDDSFDD V DRTLDEWKRV Site 2499
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- - ----------  
Kluyveromyces.waltii.IME2 DMSVDSSSSN R IPRSFAVPRI Site 2733
Debaryomyces.hansenii.SKY1 ---------- - ----------  
Saccharomyces.cerevisiae.IME2 SLGDSFNSMP D FTPRNFLIPT Site 2717
Schizosaccharomyces.japonicus.b.IME2 SNSATKSIYY T PGFPSNQETP Site 2791
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ---------- - ----------  
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ---------- - ----------  
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a IGIPQFHSPV G SPLKSIQATL Site 2813
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ---------- - ----------  
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST TYVKAQNLRI F DFDVETELGH Site 2495
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk DETEAEPYDD S FDNVNLPLEE Site 2495
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de RESKKTDSSK I PTLLSMDPNQ Site 2768
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act KQLDEREHSV E EWKELIYKEV Site 2495
Candida.albicans.IME2 TRESEMEPRR A GNEAHDLKKK Site 2700
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ---------- - ----------  
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ---------- - ----------  
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. DEPVADPYDQ S FESRDLLIDE Site 2495
Kluyveromyces.lactis.IME2 PRNLLERAVQ Q RVLDCLLDPS Site 2767
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina SLSASLLADW L EGHGMNPADI Site 2779
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. AVNSSESLPP S SAVNDISSMS Site 2494
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. AEPYDESVEA K ERTLEEWKEL Site 2499
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- M LKQKTHQGQP Site 2049
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. AEPYDESVEA K ERTLEEWKEL Site 2499
Amphimedon.queenslandica.CDK1 ---------- - ----------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ---------- - ----------  
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ---------- - ----------  
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME LSSGIITGNK K SHGAGGSSAS Site 2669
Neurospora.crassa.IME2 EALTPQSLEP K KRSSEYKWPT Site 2785
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---------- - ----------  
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---------- - ----------  
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---------- - ----------  
Hydra.magnipapillata.CDK1 ---------- - ----------  
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ---------- - -CEPELMPTF  
Ashbya.gossypii.IME2 TDSHSQIPRD F IMEPTTIPQH Site 2774
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi LGQLVGLNSP N SILKTAKTLY Site 2495
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ---------- - ----------  
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p --DDGKINQI T TDLKLLEFDE Site 2495
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace KGLVLALAHT H RCHIHRCHTR Site 2743
Schizosaccharomyces.pombe.b.IME2 LLLQKSGMEM T SVLEYSTPNP Site 2728
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a -----DEPIA E APFKFDMELD Site 2494
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom RLLPSPTIHQ T QYKPIFPPHS Site 2902
Schizosaccharomyces.pombe.CDK1 ---------- - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ---------- - ----------  
Saccoglossus.kowalevskii.CDK1 ---------- - ----------  
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---------- V SSSDLTGRQD Site 2495
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac KQLDEREHTI E EWKELIYKEV Site 2504
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ---------- - ----------  
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable LELISYADEI L QVLEANAQPG Site 2760
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ---------- - ----------  
Yarrowia.lipolytica.IME2 DLDKGNVWVR S EELECPVYPG Site 2771
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil TAGAAANALG G LGVNRRILAA Site 2495
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ---------- - ----------  
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K ---------- - ----------  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly HELSIAPQLN H KLVPSHMRPV Site 2496
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk FNFSPFELSI R PDLNQKLIPS Site 2494
Species Residue at Site 4889
in 'msaprobs'
muscle

The residue for every species at site 4889 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ---------- - ----------  
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo QFILEQQKGN R VPLCINPQSA Site 2494
Scheffersomyces.stipitis.SKY1 ---------- - ----------  
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- - ----------  

Generated by PhyloBot at 16:06, October 23rd 2019
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