cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 4001 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 4001 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 4001 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 4001 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ---------- - ----------  
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ---------- - ----------  
Danio.rerio.CDK1 ---------- P ---------- Site 2241
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ---------- I ---------- Site 2241
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ---------- - ----------  
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ---------- - ----------  
Candida.guilliermondii.IME2 ---------- - ----------  
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---------- - ----------  
Chlamydomonas.reinhardtii.LF4 ---------- A ---------- Site 2237
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ---------- P ---------- Site 2241
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---------- - ----------  
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho ---------- P ---------- Site 2241
Schizosaccharomyces.octosporus.b.IME2 ---------- - ----------  
Candida.albicans.MAPK3..Extracellular.signal.regul ---------- P ---------- Site 2241
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- A ---------- Site 2521
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---------- - ----------  
Suberites.domuncula.JNK..Stress.activated.protein. ---------- P ---------- Site 2236
Homo.sapiens.CLK3..Dual.specificity.protein.kinase -EERSFHTSR N ---------- Site 2526
Aedes.aegypti.CDK1 ---------- - ----------  
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.CLK2..Dual.specificity.protein.kinase PPNKLWDSSR D ---------- Site 2526
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos GQSKNFSLKN T ---------- Site 2702
Homo.sapiens.HIPK1..Homeodomain.interacting.protei ---------- - ----------  
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar ---------- - ----------  
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ---------- - ----------  
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. QSQPCADNAV L ---------- Site 2521
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM ---------- P ---------- Site 2241
Strongylocentrotus.purpuratus.CDK1 ---------V P ---------- Site 2237
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---------- - ----------  
Drosophila.melanogaster.CDK1 ---------- G ---------- Site 2525
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------- - ----------  
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ---------- N ---------- Site 2513
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d ---------- R ---------- Site 2241
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. ---------- - ----------  
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ---------- P ---------- Site 2236
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 ---------- - ----------  
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ---------- P ---------- Site 2236
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ---------- P ---------- Site 2241
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo ---------- - ----------  
Bombus.terrestris.CDK1 --------VP P ---------- Site 2243
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ---------- - ----------  
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar ---------- - ----------  
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ---------- P ---------- Site 2236
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d ESSSYQGTGS V ---------- Site 2740
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ---------- A ---------- Site 2237
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ---------- P ---------- Site 2241
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ---------- S ---------- Site 2241
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO ---------- - ----------  
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- A ---------- Site 2521
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl ---------- - ----------  
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 ---------- - ----------  
Homo.sapiens.HIPK3..Homeodomain.interacting.protei ---------- - ----------  
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ---------- P ---------- Site 2241
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ---------- P EQPAVPSPTP Site 2101
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci PNTKLWDSSR D ---------- Site 2526
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ---------- P ---------- Site 2241
Naegleria.gruberi.LF4 ---------- L ---------- Site 2237
Saccharomyces.bayanus.IME2 RNNLALCQLP D ---------- Site 2481
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. QSQPCAENTV L ---------- Site 2521
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ---------- P ---------- Site 2237
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki AKKASLLQQR Q ---------- Site 2484
Dictyostelium.discoideum.DYRK1..Probable.serine.th PPILPNLKDL L ---------- Site 2730
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos LGPRLGLHGV P ---------- Site 2727
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos TDANGNIQQR T ---------- Site 2522
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d ---------- - ----------  
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ---------- P ---------- Site 2237
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific ---------- P ---------- Site 2241
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos EQQSTSSPKS T ---------- Site 2522
Aspergillus.nidulans.IME2 ---------- P ---------- Site 2241
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ---------- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ---------- - ----------  
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ---------- - ----------  
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ---------- P ---------- Site 2241
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ---------- P ---------- Site 2236
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ---------- P ---------- Site 2241
Penicillium.marneffei.IME2 ---------- P ---------- Site 2187
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ---------- P ---------- Site 2241
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ---------- P ---------- Site 2237
Drosophila.melanogaster.MAK ---------- I ---------- Site 2237
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ---------- - ----------  
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ---------- - ----------  
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de LGESNSYQGT G ---------- Site 2738
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ---------- P ---------- Site 2237
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ---------- P ---------- Site 2239
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ---------- P ---------- Site 2236
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ---------- P ---------- Site 2236
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ---------- - ----------  
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ---------- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 ---------- - ----------  
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p ---------- - ----------  
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ---------- - ----------  
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ---------- P ---------- Site 2236
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki IAAANPLGMP V ---------- Site 2521
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ---------- - ----------  
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ---------- P ---------- Site 2237
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d ---------R I ---------- Site 2242
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. IAAANPLGMP V ---------- Site 2521
Yarrowia.lipolytica.SSN3..Serine.threonine.protein ---------- - ----------  
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ---------- A ---------- Site 2241
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos LGPHLGLRGV P ---------- Site 2727
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE QGASNSASSQ S ---------- Site 2521
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ---------- E ---------- Site 2241
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD ---------- P ---------- Site 2237
Candida.orthopsilosis.IME2 ---------- - ----------  
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot ---------- P ---------- Site 2241
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ---------- - ----------  
Debaryomyces.hansenii.IME2 MKEYIGKQAG N ---------- Site 2496
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ---------- P ---------- Site 2241
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin ---------- P ---------- Site 2241
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE ---------- - ----------  
Caenorhabditis.briggsae.CDK1 SKLPAGNYRG E ---------- Site 2525
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ---------- G ---------- Site 2241
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ---------- P ---------- Site 2239
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos SETSGSIPLC S ---------- Site 2522
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ---------- - ----------  
Monosiga.brevicollis.CDK1 ALPGTHVPLV P ---------- Site 2525
Saccharomyces.cerevisiae.SKY1 ---------- G ---------- Site 2511
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ---------- P ---------- Site 2241
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ---------- - ----------  
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ---------- E ---------- Site 2198
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ---------- P ---------- Site 2241
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ---------- - ----------  
Dictyostelium.discoideum.CDK10..Probable.cyclin.de ---------- P ---------- Site 2241
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d ---------- - ----------  
Ajellomyces.capsulatus.CDK1 ---------- - ----------  
Dictystelium.discoideum.MAPK3..Extracellular.signa ---------- P ---------- Site 2241
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ---------- - ----------  
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ---------- P ---------- Site 2239
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ---------- P ---------- Site 2236
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ---------- P ---------- Site 2241
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ---------- - ----------  
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri ---------- - ----------  
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ---------- P ---------- Site 2236
Saccharomyces.cerevisiae.CDK1 ---------- - ----------  
Lodderomyces.elongisporus.IME2 LSSTVLSPSL P ---------- Site 2472
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen ---------- P ---------- Site 2241
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un PALKHWDTGR D ---------- Site 2523
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar ---------- - ----------  
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ---------- - ----------  
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ---------- - ----------  
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ---------- - ----------  
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U ---------- - ----------  
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d ---------- - ----------  
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ---------- L ---------- Site 2232
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 SKLPAGNYRG E ---------- Site 2525
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ---------- - ----------  
Cryptococcus.neoformans.SSN3..Serine.threonine.pro ---------- - ----------  
Salmo.salar.CDK1 ---------- P ---------- Site 2241
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d ---------- P ---------- Site 2241
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ---------- P ---------- Site 2239
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ---------- P ---------- Site 2241
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ---------- P ---------- Site 2241
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable ---------- - ----------  
Aspergillus.fumigatus.IME2 ---------- - ----------  
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan ---------- P ---------- Site 2242
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha MANTVTGNKK T ---------- Site 2523
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ---------- I ---------- Site 2241
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S ---------- - ----------  
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma ---------- - ----------  
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina ---------- P ---------- Site 2241
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d ---------R I ---------- Site 2242
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ---------- P ---------- Site 2239
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de ---------- - ----------  
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ---------- - ----------  
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ---------- P ---------- Site 2237
Candida.glabrata.IME2 TFEEQNANNI E ---------- Site 2518
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ---------- - ----------  
Schizosaccharomyces.pombe.IME2 ---------- - ----------  
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ---------- P ---------- Site 2241
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ---------- - ----------  
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ---------- - ----------  
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d ---------- R ---------- Site 2241
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ---------- - ----------  
Branchiostoma.floridae.CDK1 ---------I E ---------- Site 2523
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara PSTKMWDSSR D ---------- Site 2526
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ---------- P ---------- Site 2241
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD ---------- - ----------  
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ---------- P ---------- Site 2241
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ---------- - ----------  
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci -EERSFHSSR N ---------- Site 2526
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos EESPMTGVCV Q ---------- Site 2776
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ---------- P ---------- Site 2241
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act ---------- P ---------- Site 2158
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. ---------- P ---------- Site 2241
Lachancea.thermotolerans.SKY1 ---------- G ---------- Site 2511
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ---------- P ---------- Site 2237
Dictyostelium.discoideum.CDK1 ---------- - ----------  
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ---------- T ---------- Site 2241
Xenopus.tropicalis.IME2 ---------- P ---------- Site 2241
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U ---------- - ----------  
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ISATTTLGMP V ---------- Site 2521
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ---------- P ---------- Site 2241
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ----STEEQH V ---------- Site 2519
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. ---------- - ----------  
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ---------- P ---------- Site 2237
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos EESPMTGVCV Q ---------- Site 2776
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ---------- P ---------- Site 2241
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ---------- D ---------- Site 2198
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ---------- P ---------- Site 2241
Encephalitozoon.cuniculi.CDK1 ---------- - ----------  
Saccharomyces.kluyveri.IME2 EIQDNVHLYS L ---------- Site 2508
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ---------- - ----------  
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a ---------- P ---------- Site 2241
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. ---------- - ----------  
Cryptococcus.neoformans.IME2 ---------- - ----------  
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ---------- - ----------  
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ---------- - ----------  
Candida.lusitaniae.IME2 ---------- L ---------- Site 2241
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom ---------- - ----------  
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A ---------- P ---------- Site 2237
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep ---------- - ----------  
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. ---------- - ----------  
Gallus.gallus.CDK2 ---------- A ---------- Site 2241
Emericella.nidulans.CDK1 ---------- - ----------  
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ---------- T ---------- Site 2241
Homo.sapiens.CDK1 ---------- Q ---------- Site 2241
Candida.albicans.CDK1 ---------- - ----------  
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca IPAPNTMATQ V ---------- Site 2521
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a ---------- P ---------- Site 2158
Mus.musculus.ICK..Serine.threonine.protein.kinase. ---------- - ----------  
Saccharomyces.castelli.IME2 LYFGNNLENL D ---------- Site 2523
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ---------- A ---------- Site 2241
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep ---------- P ---------- Site 2241
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. ---------- - ----------  
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ---------- P ---------- Site 2241
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS ---------- - ----------  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli ---------- P ---------- Site 2241
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho ---------- - ----------  
Homo.sapiens.HIPK2..Homeodomain.interacting.protei ---------- - ----------  
Acyrthosiphon.pisum.CDK1 ---------- - ----------  
Candida.tropicalis.CDK1 -MMDSHFEGE T ---------- Site 2464
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin ---------- P ---------- Site 2241
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ---------- P ---------- Site 2237
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR VSSNSPTPNA L ---------- Site 2522
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de ---------R I ---------- Site 2242
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- A ---------- Site 2521
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d ---------R I ---------- Site 2242
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA ---------- I ---------- Site 2241
Candida.albicans.SSN3..Serine.threonine.protein.ki ---------- - ----------  
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF ---------- M ---------- Site 2241
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ---------- P ---------- Site 2237
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara ---------- P ---------- Site 2237
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de ---------- P ---------- Site 2239
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ISATNTLGTP V ---------- Site 2521
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U ---------- - ----------  
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ---------- P ---------- Site 2241
Candida.dubliniensis.IME2 MDTYFETDTV T ---------- Site 2459
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ---------- P ---------- Site 2236
Aspergillus.niger.IME2 ---------- P ---------- Site 2239
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge ---------- P ---------- Site 2241
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ---------- - ----------  
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. ---------- - ----------  
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein IAAANPLGMP V ---------- Site 2521
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty NAGSSRDMEK H ---------- Site 2752
Schizosaccharomyces.japonicus.IME2 ---------- - ----------  
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ---------- - ----------  
Gallus.gallus.CDK1 ----STLPAN L ---------- Site 2525
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ---------- - ----------  
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ---------- P ---------- Site 2241
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ---------- - ----------  
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ---------- P ---------- Site 2241
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ---------- T ---------- Site 2241
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- - ----------  
Kluyveromyces.waltii.IME2 GKPEQDSKRD T ---------- Site 2497
Debaryomyces.hansenii.SKY1 ---------- R ---------- Site 2513
Saccharomyces.cerevisiae.IME2 RNNLALCQLP D ---------- Site 2481
Schizosaccharomyces.japonicus.b.IME2 ---------- - ----------  
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ---------- G ---------- Site 2241
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein QSQPSSENAV L ---------- Site 2521
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ---------P M ---------- Site 2238
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ---------- - ----------  
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST ---------- C ---------- Site 2241
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ---------- I ---------- Site 2241
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ---------- - ----------  
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ---------- P ---------- Site 2236
Candida.albicans.IME2 MDTYFETDTV S ---------- Site 2265
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ---------- - ----------  
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ---------- P ---------- Site 2241
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ---------- P ---------- Site 2237
Kluyveromyces.lactis.IME2 YRIQVLDEFD T ---------- Site 2669
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina ---------- P ---------- Site 2160
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ---------- P ---------- Site 2236
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. ---------- P ---------- Site 2241
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. ---------- P ---------- Site 2241
Amphimedon.queenslandica.CDK1 ---------- - ----------  
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ---------- - ----------  
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ----SPEQRP V ---------- Site 2523
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME ---------- P ---------- Site 2241
Neurospora.crassa.IME2 ---------- P ---------- Site 2237
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ---------- - ----------  
Dictyostelium.discoideum.DYRK2..Probable.serine.th ---------- P ---------- Site 2522
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ---------- - ----------  
Hydra.magnipapillata.CDK1 ---------- - ----------  
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ---------- P ---------- Site 2239
Ashbya.gossypii.IME2 ISANIELYQE P ---------- Site 2676
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ---------- P ---------- Site 2241
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos SETNGSIPLC S ---------- Site 2522
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ---------- - ----------  
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ---------- P ---------- Site 2241
Schizosaccharomyces.pombe.b.IME2 ---------- - ----------  
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ---------- P ---------- Site 2241
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom ---------- - ----------  
Schizosaccharomyces.pombe.CDK1 ---------- - ----------  
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch AGSKNWDSNR D ---------- Site 2526
Saccoglossus.kowalevskii.CDK1 ---------Q I ---------- Site 2242
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---------- - ----------  
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ---------- P ---------- Site 2236
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ----LAPQQC T ---------- Site 2523
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ---------- - ----------  
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ----PAARQY V ---------- Site 2523
Yarrowia.lipolytica.IME2 QVSLSPQPCI K ---------- Site 2673
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil ---------- P ---------- Site 2241
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ---------- P ---------- Site 2241
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K ---------- - ----------  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ---------- P ---------- Site 2241
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ---------- P ---------- Site 2241
Species Residue at Site 4001
in 'msaprobs'
muscle

The residue for every species at site 4001 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro VNANNREMEK L ---------- Site 2738
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo ---------- - ----------  
Scheffersomyces.stipitis.SKY1 ---------- R ---------- Site 2513
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ---------- - ----------  

Generated by PhyloBot at 07:27, June 1st 2020
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