cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 3305 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3305 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3305 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3305 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 --------AC L --E-L-DF-- Site 2073
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD --------DC L --N-H-TW-- Site 2073
Danio.rerio.CDK1 --------NA L --V-H-RF-- Site 2073
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge --------DA L --A-H-PY-- Site 2073
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d --------EA L --Q-H-PY-- Site 2073
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK --------QA L --M-H-QY-- Site 2073
Candida.guilliermondii.IME2 --------EL Y --D-Q-SY-- Site 2073
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ FSSNSGSRPS S --T-Q-RVNP Site 2686
Chlamydomonas.reinhardtii.LF4 --------QA L --R-H-PY-- Site 2073
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g --------EV L --T-H-PF-- Site 2073
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 RQLFRILFRT L --N-H-QYDY Site 2035
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 MQQKSKQFAN T --G-A-NGQT Site 2691
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho --------QA M --Q-D-PY-- Site 2073
Schizosaccharomyces.octosporus.b.IME2 --------SC K ----E-KY-- Site 2073
Candida.albicans.MAPK3..Extracellular.signal.regul --------DA L --K-H-PY-- Site 2073
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. --------EA M --A-H-PY-- Site 2073
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 LVKEEETSRR M --L-G-EGGV Site 2483
Suberites.domuncula.JNK..Stress.activated.protein. --------QA L --A-H-PY-- Site 2073
Homo.sapiens.CLK3..Dual.specificity.protein.kinase --------EA L --L-H-PF-- Site 2073
Aedes.aegypti.CDK1 --------KI L --E-H-KY-- Site 2073
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci --------EA L --K-H-PF-- Site 2073
Homo.sapiens.CLK2..Dual.specificity.protein.kinase --------EA L --Q-H-PF-- Site 2073
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos --------QA L --K-H-AW-- Site 2073
Homo.sapiens.HIPK1..Homeodomain.interacting.protei --------KT L --N-H-QF-- Site 2073
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar --------QL L --Q-H-PY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 --------QA L --N-H-KF-- Site 2073
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. --------EA M --E-H-PY-- Site 2073
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM --------EA L --A-H-PY-- Site 2073
Strongylocentrotus.purpuratus.CDK1 --------TG L --S-H-PY-- Site 2073
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca LHPERLGVSA S --H-N-NVLL Site 2483
Drosophila.melanogaster.CDK1 --------DI L --E-H-PY-- Site 2073
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 GAVPLPNIAK Q --N-S-NSNT Site 2696
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. FRQLLSTPSY N --N-V-DSDQ Site 2511
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH --------QC L --D-H-PW-- Site 2073
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d --------AA L --S-H-SY-- Site 2073
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. --------QA L --H-H-EY-- Site 2073
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET --------EA L --Q-H-PY-- Site 2073
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 --------EL L --H-H-DF-- Site 2073
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U --------EA L --Q-H-PY-- Site 2073
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. --------QA L --T-H-PF-- Site 2073
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo --------DA L --A-H-PY-- Site 2073
Bombus.terrestris.CDK1 --------KG L --S-H-PY-- Site 2073
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 --------EC L --R-H-PW-- Site 2073
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar --------EL L --Q-S-DF-- Site 2073
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. --------DA L --Q-H-PY-- Site 2073
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d --------QT L --Q-S-DF-- Site 2073
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. --------QA L --Q-H-PY-- Site 2073
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. --------DA L --C-H-PF-- Site 2073
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G --------EA L --C-H-PY-- Site 2073
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 RQLFRILFRT L --N-H-QYDY Site 2035
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 NFPGSEELLQ R --S-R-TGDV Site 2671
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO --------EA L --N-H-SF-- Site 2073
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C --------EA M --A-H-AY-- Site 2073
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl --------DA L --A-H-PY-- Site 2073
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 --------QL L --H-H-PY-- Site 2073
Homo.sapiens.HIPK3..Homeodomain.interacting.protei --------ET L --N-H-PF-- Site 2073
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O --------DG L --K-H-EY-- Site 2073
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d --------QC L --N-H-PV-- Site 2073
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci --------EA L --Q-H-PF-- Site 2073
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O --------DG L --K-H-EY-- Site 2073
Naegleria.gruberi.LF4 --------KA L --R-H-PY-- Site 2073
Saccharomyces.bayanus.IME2 --------EL C --E-M-PF-- Site 2073
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. --------EA M --E-H-PY-- Site 2073
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a --------EA L --A-F-PF-- Site 2073
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki --------DA L --N-H-PY-- Site 2073
Dictyostelium.discoideum.DYRK1..Probable.serine.th --------EA L --Q-H-SF-- Site 2073
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos --------GA L --Q-H-GF-- Site 2073
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos --------QA L --R-H-PW-- Site 2073
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d --------QC L --N-H-PT-- Site 2073
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a --------QA L --Q-H-PY-- Site 2073
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific --------EL L --D-H-PY-- Site 2073
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos --------QA L --K-H-AW-- Site 2073
Aspergillus.nidulans.IME2 --------QA M --Q-H-EY-- Site 2073
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi --------AA L --L-H-AF-- Site 2073
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se --------EA L --Q-H-RY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. --------QA L --K-H-PY-- Site 2073
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep --------AA L --A-H-PF-- Site 2073
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. --------EA L --Q-H-PY-- Site 2073
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. --------DA L --T-H-PF-- Site 2073
Penicillium.marneffei.IME2 --------QA L --N-H-EY-- Site 2073
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen --------QA L --A-H-PY-- Site 2073
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a --------MG L --Q-H-PY-- Site 2073
Drosophila.melanogaster.MAK --------QS L --K-Y-PY-- Site 2073
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH --------VA L --K-H-PF-- Site 2073
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr --------QA L --Q-H-AF-- Site 2073
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de --------QT L --Q-S-DF-- Site 2073
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep --------EA L --D-H-PY-- Site 2073
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d --------DC L --E-S-SY-- Site 2073
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin --------DA L --Q-H-PY-- Site 2073
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a --------EA L --R-H-PY-- Site 2073
Homo.sapiens.CLK1..Dual.specificity.protein.kinase --------EA L --K-H-PF-- Site 2073
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis --------EA L --L-H-PF-- Site 2073
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 RQLFRILFRT L --N-H-QYDY Site 2035
Candida.parapsilosis.IME2 --------DL A --C-S-KY-- Site 2073
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p --------QA L --E-H-VF-- Site 2073
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen --------EA C --A-H-SF-- Site 2073
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. --------EA L --R-H-PY-- Site 2073
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki --------EA M --E-H-PY-- Site 2073
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U --------EA L --Q-H-PF-- Site 2073
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a --------MG L --Q-H-PY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d --------DA R --K-H-PF-- Site 2073
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. --------EA M --E-H-PY-- Site 2073
Yarrowia.lipolytica.SSN3..Serine.threonine.protein --------DA L --L-H-PY-- Site 2073
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. --------EA L --E-H-PY-- Site 2073
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos --------GA L --Q-H-GF-- Site 2073
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE --------EA M --G-H-EY-- Site 2073
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH --------EG C --A-H-AF-- Site 2073
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD --------EI C --A-H-PF-- Site 2073
Candida.orthopsilosis.IME2 --------EL A --C-F-EY-- Site 2073
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot --------QA L --K-M-KY-- Site 2073
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str --------DA L --A-H-EY-- Site 2073
Debaryomyces.hansenii.IME2 --------TV C --A-M-SY-- Site 2073
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati --------QA M --T-H-PF-- Site 2073
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin --------DA L --E-H-EY-- Site 2073
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE --------GA L --C-H-RY-- Site 2073
Caenorhabditis.briggsae.CDK1 --------KA L --H-H-PY-- Site 2073
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO --------EA M --A-H-PY-- Site 2073
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de --------QA L --L-H-QY-- Site 2073
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos --------QA L --R-H-PW-- Site 2073
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. --------AA L --S-H-PY-- Site 2073
Monosiga.brevicollis.CDK1 --------VA L --C-H-PY-- Site 2073
Saccharomyces.cerevisiae.SKY1 --------GL V --N-H-PW-- Site 2073
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP --------DA L --R-H-PY-- Site 2073
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U --------RL L --Q-H-DY-- Site 2073
Drosophila.melanogaster.GSK3..Protein.kinase.shagg --------KA C --A-H-PF-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas TYLRRLLKDL F --I-R-EGFT Site 2028
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. --------QA L --Q-H-PY-- Site 2073
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d --------DL L --R-H-DF-- Site 2073
Dictyostelium.discoideum.CDK10..Probable.cyclin.de --------DA I --K-H-PF-- Site 2073
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d --------QC L --N-H-PT-- Site 2073
Ajellomyces.capsulatus.CDK1 --------QA C --M-H-PY-- Site 2073
Dictystelium.discoideum.MAPK3..Extracellular.signa --------EA L --A-H-PY-- Site 2073
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep --------SA L --S-H-PY-- Site 2073
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep --------DC L --E-S-SY-- Site 2073
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac --------EA L --Q-H-PY-- Site 2073
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. --------QA L --A-H-PF-- Site 2073
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO --------AC L --E-H-DY-- Site 2073
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri --------DA L --A-H-PY-- Site 2073
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha --------EA L --Q-H-PY-- Site 2073
Saccharomyces.cerevisiae.CDK1 --------RA A --I-H-PY-- Site 2073
Lodderomyces.elongisporus.IME2 --------QL S --K-M-SY-- Site 2073
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen --------EA L --A-H-PY-- Site 2073
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un --------AA L --K-H-PF-- Site 2073
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar --------QC L --N-H-PS-- Site 2073
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. --------QC M --FNS-TY-- Site 2073
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D --------EA I --R-H-PY-- Site 2073
Homo.sapiens.CLK4..Dual.specificity.protein.kinase --------EA L --Q-H-PF-- Site 2073
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U --------ET L --N-H-PF-- Site 2073
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d --------QL L --Q-H-PY-- Site 2073
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen --------EA C --A-H-SF-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 --------KA L --V-H-PY-- Site 2073
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep --------RA L --Q-H-SY-- Site 2073
Cryptococcus.neoformans.SSN3..Serine.threonine.pro --------DA L --R-H-PW-- Site 2073
Salmo.salar.CDK1 --------NA L --V-H-RF-- Site 2073
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d --------QA L --R-K-RY-- Site 2073
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d --------KA L --L-H-QY-- Site 2073
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi --------EL L --A-H-PY-- Site 2073
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen --------EA C --A-H-SF-- Site 2073
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable --------DV V --H-I-TF-- Site 1883
Aspergillus.fumigatus.IME2 --------DA L --N-H-EY-- Site 2073
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan --------QA M --Q-D-PY-- Site 2073
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha --------SA L --E-H-PF-- Site 2073
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha --------EA L --A-H-PY-- Site 2073
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S --------EA L --S-H-PY-- Site 2073
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma --------ET L --N-H-PF-- Site 2073
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina --------EA L --A-H-PY-- Site 2073
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d --------EA M --K-H-VY-- Site 2073
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. --------DC L --E-S-SY-- Site 2073
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de --------QL L --E-Q-PY-- Site 2073
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S --------EA L --K-H-EY-- Site 2073
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. --------EA L --Q-H-PF-- Site 2073
Candida.glabrata.IME2 --------QL S --S-M-PF-- Site 2073
Homo.sapiens.MAK..Serine.threonine.protein.kinase. --------QA L --K-H-PY-- Site 2073
Schizosaccharomyces.pombe.IME2 --------MC L --D-L-EF-- Site 2073
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P --------DA L --K-H-PY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl --------QA M --Q-H-PY-- Site 2073
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom --------AA L --R-H-PF-- Site 2073
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. FRILFRTLNH Q --Y-D-YTFD Site 2038
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d --------AA L --N-H-PY-- Site 2073
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d --------QL L --D-S-AY-- Site 2073
Branchiostoma.floridae.CDK1 --------AA I --N-H-VY-- Site 2073
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara --------EA L --K-H-PF-- Site 2073
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH --------EA M --C-H-PF-- Site 2073
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD --------SL L --T-NSEY-- Site 2073
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR --------AA C --Q-H-AF-- Site 2073
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. --------QA L --R-Y-PY-- Site 2073
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci --------EA L --L-H-PF-- Site 2073
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos --------YA L --Q-H-SF-- Site 2073
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep --------AA L --A-H-PF-- Site 2073
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act --------AA L --R-H-PF-- Site 2073
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. --------QA L --A-H-AY-- Site 2073
Lachancea.thermotolerans.SKY1 --------GM V --N-H-PW-- Site 2073
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a --------EA L --S-H-PY-- Site 2073
Dictyostelium.discoideum.CDK1 --------EA L --L-H-PY-- Site 2073
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. --------EA L --T-H-PY-- Site 2073
Xenopus.tropicalis.IME2 --------AA L --T-H-AF-- Site 2073
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U --------KT L --N-H-PF-- Site 2073
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. --------EA M --E-H-PY-- Site 2073
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d --------VA L --T-H-PF-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara --------AA L --S-H-QY-- Site 2073
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. --------EA L --V-H-DY-- Site 2073
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD --------EA L --A-H-PF-- Site 2073
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos --------YA L --Q-H-SF-- Site 2073
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen --------EA C --A-H-SF-- Site 2073
Drosophila.melanogaster.GSK3H..Putative.glycogen.s --------MG C --A-H-PF-- Site 2073
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD --------AA L --K-H-QY-- Site 2073
Encephalitozoon.cuniculi.CDK1 --------NG L --S-H-KY-- Site 2073
Saccharomyces.kluyveri.IME2 --------QV C --C-M-PY-- Site 2073
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci --------EA L --Q-H-PF-- Site 2073
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a --------QA L --A-H-PY-- Site 2073
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. --------EA L --V-H-DY-- Site 2073
Cryptococcus.neoformans.IME2 --------QC I --D-H-PY-- Site 2073
Homo.sapiens.HIPK4..Homeodomain.interacting.protei --------AA L --R-H-PF-- Site 2073
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote --------EC L --R-H-PW-- Site 2073
Candida.lusitaniae.IME2 --------EL F --R-S-TY-- Site 2073
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom --------KT L --N-H-QF-- Site 2073
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A --------QA M --Q-D-PY-- Site 2073
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep --------QA L --L-H-PY-- Site 2073
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. --------QL L --Q-Q-PY-- Site 2073
Gallus.gallus.CDK2 --------AA L --S-H-PF-- Site 2073
Emericella.nidulans.CDK1 --------QA C --M-H-PY-- Site 2073
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. --------QA L --Q-H-PY-- Site 2073
Homo.sapiens.CDK1 --------MA L --N-H-PY-- Site 2073
Candida.albicans.CDK1 --------RA L --I-H-PY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca --------EA M --D-H-SY-- Site 2073
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a --------AA L --R-H-PF-- Site 2073
Mus.musculus.ICK..Serine.threonine.protein.kinase. --------QA L --R-Y-PY-- Site 2073
Saccharomyces.castelli.IME2 --------DL C --L-M-EY-- Site 2073
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec --------QA L --R-H-PF-- Site 2073
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep --------QA L --K-T-KY-- Site 2073
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. --------AA L --S-H-EY-- Site 2073
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly --------EI C --C-H-RY-- Site 2073
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS --------DL L --K-T-PF-- Site 2073
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli --------QA L --K-M-RY-- Site 2073
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho --------DA L --N-H-DF-- Site 2073
Homo.sapiens.HIPK2..Homeodomain.interacting.protei --------ET L --N-H-PF-- Site 2073
Acyrthosiphon.pisum.CDK1 --------KI L --E-M-DY-- Site 2073
Candida.tropicalis.CDK1 --------EL A --K-M-PY-- Site 2073
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin --------QA M --Q-D-QY-- Site 2073
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G --------EA C --A-H-AM-- Site 2073
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR --------EA M --D-H-PY-- Site 2073
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de --------DA M --K-H-PF-- Site 2073
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 --------EA M --A-H-AY-- Site 2073
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d --------EA M --K-H-VY-- Site 2073
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA --------EA L --A-H-PY-- Site 2073
Candida.albicans.SSN3..Serine.threonine.protein.ki --------QA L --L-H-PY-- Site 2073
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF --------QA L --R-H-PY-- Site 2073
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA --------EA C --A-H-QF-- Site 2073
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara --------GA L --A-H-SY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de --------MA L --E-H-EY-- Site 2073
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei --------EA M --D-H-PY-- Site 2073
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U --------DT L --S-Q-SF-- Site 2073
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d --------DG L --K-H-EY-- Site 2073
Candida.dubliniensis.IME2 --------EI A --K-M-QY-- Site 2073
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a --------EA L --R-H-PY-- Site 2073
Aspergillus.niger.IME2 --------QA L --N-H-EY-- Site 2073
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge --------EA L --A-H-SY-- Site 2073
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d --------DL L --H-H-EY-- Site 2073
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. --------AA L --S-H-EY-- Site 2073
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein --------EA M --E-H-PY-- Site 2073
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty --------TL F PVS-H-TA-- Site 2073
Schizosaccharomyces.japonicus.IME2 --------EC L --A-M-PF-- Site 2073
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. --------DA L --R-H-PY-- Site 2073
Gallus.gallus.CDK1 --------MA L --N-H-PY-- Site 2073
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep --------EA L --Q-H-PY-- Site 2073
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P --------NA M --V-H-PF-- Site 2073
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE --------AA L --G-H-EF-- Site 2073
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. --------AA C --Q-H-AF-- Site 2073
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. --------EA L --A-H-PY-- Site 2073
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ --------EA M --D-H-KF-- Site 2073
Kluyveromyces.waltii.IME2 --------EI C --A-M-PY-- Site 2073
Debaryomyces.hansenii.SKY1 --------GM V --N-H-SW-- Site 2073
Saccharomyces.cerevisiae.IME2 --------EL C --E-M-PF-- Site 2073
Schizosaccharomyces.japonicus.b.IME2 --------LC I ----L-RY-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un --------SA L --S-H-PY-- Site 2073
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein --------EA M --E-H-PY-- Site 2073
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a --------EA L --S-H-PY-- Site 2073
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep --------GA L --N-H-PY-- Site 2073
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST --------QC L --L-S-SY-- Site 2073
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk --------EA L --A-H-AY-- Site 2073
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de --------DL L --R-H-DY-- Site 2073
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act --------EA L --Q-H-PY-- Site 2073
Candida.albicans.IME2 --------EI A --K-M-QY-- Site 2073
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d --------DA L --L-H-PF-- Site 2073
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k --------DA L --K-H-PY-- Site 2073
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. --------QA L --A-H-AY-- Site 2073
Kluyveromyces.lactis.IME2 --------EI C --A-L-PY-- Site 2073
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina --------AA L --R-H-PF-- Site 2073
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. --------DA L --Q-H-PY-- Site 2073
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. --------EA L --A-H-AY-- Site 2073
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 RQLFRILFRT L --N-H-QYDY Site 2035
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. --------EA L --A-H-AY-- Site 2073
Amphimedon.queenslandica.CDK1 --------NG M --R-H-PF-- Site 2073
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d --------QL L --E-S-SY-- Site 2073
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U --------AA L --N-H-QY-- Site 2073
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME --------AA L --K-H-GF-- Site 2073
Neurospora.crassa.IME2 --------QA L --A-H-DY-- Site 2073
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME --------AA M --Q-H-PY-- Site 2073
Dictyostelium.discoideum.DYRK2..Probable.serine.th --------QG L --K-H-DW-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep --------RA L --Q-H-SY-- Site 2073
Hydra.magnipapillata.CDK1 --------NA M --N-H-PY-- Site 2073
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar --------DS L --D-S-SY-- Site 2073
Ashbya.gossypii.IME2 --------DL S --Q-M-PY-- Site 2073
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi --------EL L --T-H-PY-- Site 2073
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos --------QA L --R-H-PW-- Site 2073
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p --------QC L --C-S-PY-- Site 2073
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace --------EA L --R-H-PY-- Site 2073
Schizosaccharomyces.pombe.b.IME2 --------YC K ----E-VF-- Site 2073
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a --------QA L --A-H-PY-- Site 2073
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom --------ET L --N-H-PF-- Site 2073
Schizosaccharomyces.pombe.CDK1 --------RA L --Q-Q-NY-- Site 2073
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch --------DS L --K-H-PF-- Site 2073
Saccoglossus.kowalevskii.CDK1 --------TA L --S-H-RY-- Site 2073
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas PVSGMERERK V --S-M-RLHR Site 2483
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac --------EA L --Q-H-PY-- Site 2073
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep --------TA L --A-H-PY-- Site 2073
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable --------DV M --Q-V-TF-- Site 1914
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep --------TA L --A-H-PY-- Site 2073
Yarrowia.lipolytica.IME2 --------DI M --Y-H-RY-- Site 2073
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil --------NA L --E-H-KY-- Site 2073
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli --------NA L --V-H-RF-- Site 2073
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K --------DL L --E-H-LW-- Site 2073
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly --------DA M --V-H-PF-- Site 2073
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk --------EA M --C-H-PF-- Site 2073
Species Residue at Site 3305
in 'msaprobs'
muscle

The residue for every species at site 3305 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro --------YV V --R-H-PF-- Site 2073
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo --------DA L --A-H-PY-- Site 2073
Scheffersomyces.stipitis.SKY1 --------GM V --N-H-PW-- Site 2073
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep --------EA L --Q-H-PY-- Site 2073

Generated by PhyloBot at 16:30, October 23rd 2019
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