cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 3128 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3128 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3128 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3128 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 EL-------L Q WNPDARPSAQ Site 2046
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD PM-------L N YLPEKRATAK Site 2046
Danio.rerio.CDK1 QM-------L T YDPNKRISAK Site 2046
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge KM-------L T FDPRKRITVE Site 2046
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d NL-------L K CNPVQRICAD Site 2046
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK KM-------L M PNPQSRLTAD Site 2046
Candida.guilliermondii.IME2 IC-------L R WNPETRPIAS Site 2046
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ VNQTDSYAQR P RETVSMSLKE Site 2474
Chlamydomonas.reinhardtii.LF4 KL-------L M YNPDERLSAR Site 2046
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g KM-------L T YVPSKRISAI Site 2046
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 LPIQFGRYLE I VRNLSFEETP Site 1902
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho KL-------L T MDPIKRITSE Site 2046
Schizosaccharomyces.octosporus.b.IME2 QL-------L A WDPFIRPSAV Site 2046
Candida.albicans.MAPK3..Extracellular.signal.regul KL-------L I FNPAKRITVE Site 2046
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. KL-------L R YDHQDRLTAK Site 2046
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 KKGFPDDYVF D WTALTRNASS Site 2041
Suberites.domuncula.JNK..Stress.activated.protein. KM-------L Q IDPQNRITVE Site 2046
Homo.sapiens.CLK3..Dual.specificity.protein.kinase RM-------L E FDPAQRITLA Site 2046
Aedes.aegypti.CDK1 KC-------L I YDPVHRISAK Site 2046
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci KM-------L E YDPAKRITLK Site 2046
Homo.sapiens.CLK2..Dual.specificity.protein.kinase SM-------L E YEPAKRLTLG Site 2046
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos RC-------L V WEPSLRMTPD Site 2046
Homo.sapiens.HIPK1..Homeodomain.interacting.protei KM-------L T IDADKRITPL Site 2046
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar GC-------L H MDPAERQTCE Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 NM-------F I YDPIIRISAQ Site 2046
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. KL-------L R YDHQQRLTAK Site 2046
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM KM-------L T FNPHKRIPVE Site 2046
Strongylocentrotus.purpuratus.CDK1 SM-------L C YEPDKRISAK Site 2046
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca FDYVYDWTLL K CKQSQKAKVQ Site 2046
Drosophila.melanogaster.CDK1 KM-------L I YDPVHRISAK Site 2046
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ELFVREGFDF D FMYDWILKKQ Site 2037
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH PT-------L E FAPEKRPTAQ Site 2046
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d SL-------L L YESKSRMSAE Site 2046
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. QF-------L Q MIPSRRVYAH Site 2046
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET KM-------L I IDPAKRISVD Site 2046
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 KC-------L H IDPDKRPFCA Site 2046
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U KM-------L I IDPAKRISVD Site 2046
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. KM-------L E LDVDKRLTAA Site 2046
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo RM-------L V FDPSKRISAK Site 2046
Bombus.terrestris.CDK1 KL-------L T YDPNQRITAK Site 2046
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 PM-------L E LIPEKRATAA Site 2046
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar KC-------L Q IDPDKRPSCA Site 2046
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. KM-------L V IDASKRISVD Site 2046
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d HM-------L T LDPSKRCTAE Site 2046
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. AM-------V A YDPDERIAAH Site 2046
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. KI-------F K YVPDQRITPL Site 2046
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G AL-------L Q YLPEDRMKPY Site 2046
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO RM-------L T IDQERRLTPA Site 2046
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C KL-------L R YDHQDRLTAK Site 2046
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl RM-------L V FDPSKRISAK Site 2046
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 GC-------L H MDPTQRLTCE Site 2046
Homo.sapiens.HIPK3..Homeodomain.interacting.protei KM-------L L IDADLRITPA Site 2046
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O KF-------L T YFPGRRISAE Site 2046
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d NL-------L C LNPTERFLTE Site 2046
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci NM-------L E YEPAKRLTLG Site 2046
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O KF-------L T YFPGRRISAE Site 2046
Naegleria.gruberi.LF4 KL-------L I YNPEERITAS Site 2046
Saccharomyces.bayanus.IME2 KC-------L R WDPNERATAQ Site 2046
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. KL-------L R YDHQQRLTAK Site 2046
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a GM-------L L LDPESRITAA Site 2046
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki KM-------L L FNPSNRISAA Site 2046
Dictyostelium.discoideum.DYRK1..Probable.serine.th KM-------L I YDPQKRITPL Site 2046
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos RM-------L E YEPAARISPL Site 2046
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos QC-------L E WDPAVRMTPG Site 2046
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d NL-------L K LDPADRYLTE Site 2046
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a RL-------L A FAPDKRLSAE Site 2046
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific KC-------L V RNPRERISIA Site 2046
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos RC-------L V WEPSLRMTPE Site 2046
Aspergillus.nidulans.IME2 WC-------L M WDPKNRPTSS Site 2046
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi KL-------L D LNPASRITAE Site 2046
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se KL-------L H FDPDKRISVE Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. EM-------L N WDPKKRPTAS Site 2046
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep QM-------L H YDPNKRISAK Site 2046
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. KM-------L V IDPAKRISVD Site 2046
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. RL-------L Q YSPNLRCTAL Site 2046
Penicillium.marneffei.IME2 WC-------L M WDPRNRPTST Site 2046
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen KM-------L V LDTDKRITAS Site 2046
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a KI-------L T FNPMDRLTAE Site 2046
Drosophila.melanogaster.MAK DM-------L A YDPDKRPTAQ Site 2046
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH KC-------L E LNPEKRVPPE Site 2046
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr QI-------L M LDPAKRISIN Site 2046
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de HM-------L T LDPSKRCTAE Site 2046
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep KM-------I L YDPSKRITAS Site 2046
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d FL-------F M YDPKKRATSG Site 2046
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin KM-------L V IDPAKRISVD Site 2046
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a KM-------L V IDPDKRISVD Site 2046
Homo.sapiens.CLK1..Dual.specificity.protein.kinase KM-------L E YDPAKRITLR Site 2046
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis KL-------L D LNPASRITAE Site 2046
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 SC-------L Q WSPEQRPTAQ Site 2046
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p KM-------L Q YDPKSRITAK Site 2046
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen SL-------L E YTPSSRLSPL Site 2046
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. KM-------L V VDPDKRISVD Site 2046
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki KL-------L R YDHQSRLTAR Site 2046
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U RM-------L E YDPAKRITLD Site 2046
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a KI-------L T FNPMDRLTAE Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d KL-------L Q FEGRNRISAE Site 2046
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. KL-------L R YDHQSRLTAR Site 2046
Yarrowia.lipolytica.SSN3..Serine.threonine.protein RL-------L E YDPAKRLTAN Site 2046
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. KM-------L E LDVEKRLTAT Site 2046
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos RM-------L E YEPAARISPL Site 2046
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE KL-------L R YDHAERLTAQ Site 2046
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ST-------L A YAPERRVKPL Site 2046
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD KI-------L L YDPSSRLKPV Site 2046
Candida.orthopsilosis.IME2 SC-------L Q WDPISRPTAQ Site 2046
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot GL-------F T YNPCSRTTAM Site 2046
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str RM-------L V IDPEKRISVD Site 2046
Debaryomyces.hansenii.IME2 AC-------L T WNPDVRADVE Site 2046
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati KL-------L Q YAPQKRMTAI Site 2046
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin SL-------L K YDPITRIDAI Site 2046
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE EI-------L R YPPEHRLTAK Site 2046
Caenorhabditis.briggsae.CDK1 GL-------L I YDPALRISSK Site 2046
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO KL-------L R YDHVDRLTAR Site 2046
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de QF-------L L YPPRQRIAAS Site 2046
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos RC-------L Q WDPSARLTPA Site 2046
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. KC-------L A FNPAKRISAY Site 2046
Monosiga.brevicollis.CDK1 KC-------L V YNPAKRISAK Site 2046
Saccharomyces.cerevisiae.SKY1 PM-------L Q LDPRKRADAG Site 2046
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP RL-------L T FSPARRICVD Site 2046
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U QC-------L Y MDADTRPPCS Site 2046
Drosophila.melanogaster.GSK3..Protein.kinase.shagg LL-------L E YTPSARITPL Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. RL-------L V FAPDKRLSAT Site 2046
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d KC-------L H IDPDKRPFCA Site 2046
Dictyostelium.discoideum.CDK10..Probable.cyclin.de QL-------L T YDPTKRITAS Site 2046
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d NL-------L K LDPADRYLTE Site 2046
Ajellomyces.capsulatus.CDK1 AM-------L E YDPARRISAK Site 2046
Dictystelium.discoideum.MAPK3..Extracellular.signa RM-------L Y FDPSKRLTVE Site 2046
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep KC-------L T FNPAKRISAY Site 2046
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep LL-------F M YDPKKRATAG Site 2046
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac KM-------L V IDASKRISVD Site 2046
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. KM-------L E LDVDKRLTAA Site 2046
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO KM-------L S YDLHLRPSAL Site 2046
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri RM-------L L FDPLKRISAK Site 2046
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha KM-------L V IDPAKRISVD Site 2046
Saccharomyces.cerevisiae.CDK1 KL-------L A YDPINRISAR Site 2046
Lodderomyces.elongisporus.IME2 SC-------L L WDPLARPDAN Site 2046
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen KM-------L V LDTDKRITAA Site 2046
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un GM-------L E YEPSKRMTLA Site 2046
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar NL-------L K LDPADRYLTE Site 2046
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. HI-------M K YDPNIRYSAL Site 2046
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D AL-------L V LNPHNRLTAK Site 2046
Homo.sapiens.CLK4..Dual.specificity.protein.kinase RM-------L E YDPTQRITLD Site 2046
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U KM-------L T IDADKRITPI Site 2046
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d GC-------L H MDPAERLTCE Site 2046
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen SL-------L E YTPSSRLSPL Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 GL-------L I YDPSLRLNAK Site 2046
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep EM-------L T FNPHKRISAF Site 2046
Cryptococcus.neoformans.SSN3..Serine.threonine.pro KM-------F E WDPARRITAR Site 2046
Salmo.salar.CDK1 QM-------L A YDPNKRISAK Site 2046
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d GL-------F T FNPCARCTAS Site 2046
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d QF-------L L YPPHQRIAAS Site 2046
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi CC-------L K RDPKQRISIP Site 2046
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen RL-------L E YTPTARLTPL Site 2046
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable LM-------L Q IDPSDRITIK Site 1867
Aspergillus.fumigatus.IME2 LA-------C I FEPFRDL-VP Site 2044
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan KL-------L T MDPIRRITSE Site 2046
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha RM-------L E YEPSKRISLH Site 2046
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha KM-------L Q LDVEKRLTAT Site 2046
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S KL-------L K FNPDERISVE Site 2046
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma KM-------L T IDADKRVTPI Site 2046
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina RM-------L T FNPNKRITVE Site 2046
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d KF-------L Q YESKKRVPAE Site 2046
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. FL-------F M YDPKKRATAG Site 2046
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de GC-------L R MDPAERLSCE Site 2046
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S KM-------L V IDPEQRISVD Site 2046
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. KM-------L A LDPEQRPTAS Site 2046
Candida.glabrata.IME2 LC-------L K WDPNERASVE Site 2046
Homo.sapiens.MAK..Serine.threonine.protein.kinase. EM-------L N WDPKKRPTAS Site 2046
Schizosaccharomyces.pombe.IME2 QL-------L K WDPAKRPTAE Site 2046
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P NL-------L I FNPAKRITVD Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl KL-------L V CRPNQRVSAE Site 2046
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom RM-------L T WESHERISPS Site 2046
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d SL-------L L YESKSRMSAE Site 2046
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d GC-------L K MNPDERLTCA Site 2046
Branchiostoma.floridae.CDK1 QM-------L L YEPNKRISAK Site 2046
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara SM-------L E YEPSKRISLA Site 2046
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH KM-------L Q YTPTDRLTAA Site 2046
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD KC-------L N LSPCARETAC Site 2046
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR KI-------I E YTPTSRPTPQ Site 2046
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. DM-------L Q WDPKKRPTAS Site 2046
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci RM-------L E FDPAQRITLA Site 2046
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos RM-------L D YDPKTRIQPY Site 2046
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep QM-------L H YDPNKRISAK Site 2046
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act RM-------L R FEPSARVSAA Site 2046
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. KM-------L V LDSDKRITAA Site 2046
Lachancea.thermotolerans.SKY1 PM-------L R LDPQERADAG Site 2046
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a QI-------L T FSPMDRLTAE Site 2046
Dictyostelium.discoideum.CDK1 KM-------L Q YEPSKRISAK Site 2046
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. RM-------L V LDAEQRVTAA Site 2046
Xenopus.tropicalis.IME2 QM-------L Q YDSNKRISAK Site 2046
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U KM-------L T IDADKRITPL Site 2046
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. KL-------L R YDHQSRLTAR Site 2046
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d QM-------L Q YDSNKRISAK Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara QL-------L L YDPSKRISAK Site 2046
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. QM-------L K GFPRDRVSAQ Site 2046
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD KL-------L Q FNPDKRITAE Site 2046
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos RM-------L D YDPKTRIQPY Site 2046
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen RL-------L E YTPTARLTPL Site 2046
Drosophila.melanogaster.GSK3H..Putative.glycogen.s KM-------L I YSPNARVSPL Site 2046
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD NM-------L A YCPEKRITAA Site 2046
Encephalitozoon.cuniculi.CDK1 KM-------L E YDPKMRMTAK Site 2046
Saccharomyces.kluyveri.IME2 VC-------L T WDPDKRANVN Site 2046
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci RM-------L E YDPARRITLD Site 2046
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a KM-------L T FNPHKRIEVE Site 2046
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. QM-------L K GFPRDRVSAQ Site 2046
Cryptococcus.neoformans.IME2 DL-------L R YNPKYRMTAA Site 2046
Homo.sapiens.HIPK4..Homeodomain.interacting.protei RM-------L T WESHERISPS Site 2046
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote PM-------L E LMPEKRATAA Site 2046
Candida.lusitaniae.IME2 YC-------F L WDPDSRPTAE Site 2046
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom KM-------L T IDADKRITPL Site 2046
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A KL-------L L MDPNKRITSE Site 2046
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep KF-------L V YPSKQRISAR Site 2046
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. AC-------L A MDPGARQSCE Site 2046
Gallus.gallus.CDK2 QM-------L H YDPNKRISAK Site 2046
Emericella.nidulans.CDK1 AL-------L E YDPARRISAK Site 2046
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. AM-------V A YDPDERIAAH Site 2046
Homo.sapiens.CDK1 KM-------L I YDPAKRISGK Site 2046
Candida.albicans.CDK1 QM-------L V YDPSRRISAK Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca KL-------L R YDHQARLTAR Site 2046
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a RM-------L R FEPSARISAA Site 2046
Mus.musculus.ICK..Serine.threonine.protein.kinase. DL-------L Q WDPKKRPTAS Site 2046
Saccharomyces.castelli.IME2 KC-------L R WNPLERASAN Site 2046
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec KM-------L E YDPAKRLSLD Site 2046
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep GL-------F L FNPCTRTTAS Site 2046
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. KL-------L Q CSPKNRLSAQ Site 2046
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly HL-------L V YSPDVRFGGL Site 2046
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS QC-------F E MDPQKRSSAE Site 2046
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli GL-------F T FNPCTRTTAS Site 2046
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho KL-------L V LDPAQRIDSD Site 2046
Homo.sapiens.HIPK2..Homeodomain.interacting.protei KM-------L T IDADKRITPI Site 2046
Acyrthosiphon.pisum.CDK1 AM-------C T YNPANRMSAE Site 2046
Candida.tropicalis.CDK1 GC-------L K WDPLARADAN Site 2046
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin KL-------L L MDPNKRITSE Site 2046
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G RL-------L E YTPSNRITPM Site 2046
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR RL-------L R YDHYERYTAR Site 2046
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de KL-------L Q FEGRNRISAE Site 2046
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 KL-------L R YDHQDRLTAK Site 2046
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d KF-------L Q YESKKRVSAE Site 2046
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA KM-------L Q LDVEKRLTAT Site 2046
Candida.albicans.SSN3..Serine.threonine.protein.ki GL-------L K YDPELRLTAD Site 2046
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF KL-------L A YNPDDRLSAR Site 2046
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA RL-------L E YTPKSRIKPL Site 2046
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara KM-------L V LDADARLTAS Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de AI-------L T LNPDERLSAS Site 2046
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei KL-------L R YDHQTRLTAR Site 2046
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U KM-------L M IDADKRISPA Site 2046
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d KF-------L T YYPGRRINAE Site 2046
Candida.dubliniensis.IME2 SC-------L K WDPSARADAT Site 2046
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a KM-------L V IDPDKRISVD Site 2046
Aspergillus.niger.IME2 WC-------L M WDPKNRPTST Site 2046
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge KM-------L V LDTDKRITAA Site 2046
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d AC-------L Q IDPADRISSS Site 2046
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. KL-------L Q CSPKNRLSAQ Site 2046
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein KL-------L R YDHQSRLTAR Site 2046
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty RM-------L N FDPKQRILRT Site 2046
Schizosaccharomyces.japonicus.IME2 AI-------L K WDPKKRPTAS Site 2046
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. RM-------L V IDPERRISVD Site 2046
Gallus.gallus.CDK1 KM-------L I YDPAKRISGK Site 2046
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep NL-------L K CNPVQRISAE Site 2046
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P KL-------L E YTPTEREAAV Site 2046
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE RC-------L I YDPARRMGSR Site 2046
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. KI-------I E YTPTSRPTPQ Site 2046
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. KM-------L V LDAEQRVTAG Site 2046
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ NL-------L R YDHQERLTAK Site 2046
Kluyveromyces.waltii.IME2 EC-------L T WDPKKRATVD Site 2046
Debaryomyces.hansenii.SKY1 PM-------L T LQPELRADAG Site 2046
Saccharomyces.cerevisiae.IME2 KC-------L R WDPNERATAQ Site 2046
Schizosaccharomyces.japonicus.b.IME2 EL-------L A WNPNLRPSAK Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un KC-------L T FSPANRISAY Site 2046
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein KL-------L R YDHQQRLTAK Site 2046
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a QI-------L T FSPMDRLTAE Site 2046
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep KC-------L T FNPAKRISAY Site 2046
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST KT-------L K YHPCERLVPL Site 2046
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk KM-------L V LDAEKRITAT Site 2046
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de AC-------L Q IDPAERTSST Site 2046
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act KM-------L V IDASKRISVD Site 2046
Candida.albicans.IME2 SC-------L K WDPSARADAT Site 2046
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d AM-------L T FSPQKRISAS Site 2046
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k KL-------L E LNPEARISAS Site 2046
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. KM-------L V LDSDKRITAA Site 2046
Kluyveromyces.lactis.IME2 SC-------L K WNPSERATAN Site 2046
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina RM-------L R FEPSARISAA Site 2046
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. KM-------L V IDPVKRISVD Site 2046
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. RM-------L V LDSDQRVSAA Site 2046
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. RM-------L V LDSDQRVSAA Site 2046
Amphimedon.queenslandica.CDK1 QM-------L C YEPCKRITAI Site 2046
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d GC-------L K MNPDDRLTCS Site 2046
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U QL-------L L YDPSKRISAK Site 2046
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME GL-------L T YDPKQRLSAD Site 2046
Neurospora.crassa.IME2 WC-------L M WDPKNRPTST Site 2046
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME KL-------L I CRPNQRISAE Site 2046
Dictyostelium.discoideum.DYRK2..Probable.serine.th DC-------L K WEPSQRITAE Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep EM-------L T FNPHKRISAF Site 2046
Hydra.magnipapillata.CDK1 KM-------L L YSPASRISAK Site 2046
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar FL-------F M YDPKKRATAK Site 2046
Ashbya.gossypii.IME2 AC-------L V WNPDDRATVE Site 2046
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi CC-------L V RNPKERISIP Site 2046
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos RC-------L H WDPSARLTPA Site 2046
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p DV-------L K YDPLERFNAL Site 2046
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace RL-------L L FNPDKRLSAE Site 2046
Schizosaccharomyces.pombe.b.IME2 CL-------L A WNPDVRPTAK Site 2046
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a KM-------L T FNPHKRIEVE Site 2046
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom KM-------L L IDADLRITPI Site 2046
Schizosaccharomyces.pombe.CDK1 AM-------L V YDPAHRISAK Site 2046
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch SM-------L E YEPARRLTLA Site 2046
Saccoglossus.kowalevskii.CDK1 QM-------L T YEPNKRMSAK Site 2046
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas DYVFDWNMLK F GASRAADDAE Site 2052
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac KM-------L V IDASKRISVD Site 2046
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep RL-------L Q YDPSQRISAK Site 2046
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable FM-------L H INPSDRLAIK Site 1901
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep QL-------L Q YDPSQRITAK Site 2046
Yarrowia.lipolytica.IME2 MC-------L T WDPDARCSAR Site 2046
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil HL-------L N YDPIKRIDAF Site 2046
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli QM-------L I YDPNKRISAK Site 2046
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K KC-------F E LNSYKRPSAS Site 2046
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly RL-------L E YTPTERLAAI Site 2046
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk KM-------L Q YTPTDRLTAA Site 2046
Species Residue at Site 3128
in 'msaprobs'
muscle

The residue for every species at site 3128 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro RM-------L Q FDPKQRISPY Site 2046
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo RM-------L V FDPSKRISAK Site 2046
Scheffersomyces.stipitis.SKY1 PM-------L T IQPEMRADAG Site 2046
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep NL-------L K CNPVQRISAE Site 2046

Generated by PhyloBot at 02:30, October 16th 2019
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