cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 3117 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3117 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3117 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3117 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 SM-------L T EL-------L Site 2040
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD AF-------L L PM-------L Site 2040
Danio.rerio.CDK1 DL-------L G QM-------L Site 2040
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge DL-------V E KM-------L Site 2040
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d DL-------L Q NL-------L Site 2040
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK DL-------L K KM-------L Site 2040
Candida.guilliermondii.IME2 DM-------I R IC-------L Site 2040
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ LS-------G P VNQTDSYAQR Site 2463
Chlamydomonas.reinhardtii.LF4 DL-------I V KL-------L Site 2040
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g DL-------L H KM-------L Site 2040
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 LA-------Q G LPIQFGRYLE Site 1870
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho HL-------L Q KL-------L Site 2040
Schizosaccharomyces.octosporus.b.IME2 EM-------I A QL-------L Site 2040
Candida.albicans.MAPK3..Extracellular.signal.regul DL-------L E KL-------L Site 2040
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. DY-------L D KL-------L Site 2040
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 AL-------Y R KKGFPDDYVF Site 2030
Suberites.domuncula.JNK..Stress.activated.protein. DL-------L S KM-------L Site 2040
Homo.sapiens.CLK3..Dual.specificity.protein.kinase DL-------M R RM-------L Site 2040
Aedes.aegypti.CDK1 DL-------L Q KC-------L Site 2040
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci DL-------I G KM-------L Site 2040
Homo.sapiens.CLK2..Dual.specificity.protein.kinase DL-------I E SM-------L Site 2040
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos DF-------L R RC-------L Site 2040
Homo.sapiens.HIPK1..Homeodomain.interacting.protei DL-------L K KM-------L Site 2040
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar AL-------M K GC-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 NL-------L E NM-------F Site 2040
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. DL-------L D KL-------L Site 2040
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM DL-------L G KM-------L Site 2040
Strongylocentrotus.purpuratus.CDK1 DL-------L K SM-------L Site 2040
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca EG-------Y Q FDYVYDWTLL Site 2035
Drosophila.melanogaster.CDK1 DL-------I Q KM-------L Site 2040
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 SM-------F R ELFVREGFDF Site 1943
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH EF-------L I PT-------L Site 2040
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d HL-------L S SL-------L Site 2040
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. SL-------A V QF-------L Site 2040
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET DL-------L S KM-------L Site 2040
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 DL-------A K KC-------L Site 2040
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U DL-------L S KM-------L Site 2040
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. DL-------L E KM-------L Site 2040
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo HL-------L C RM-------L Site 2040
Bombus.terrestris.CDK1 DL-------L L KL-------L Site 2040
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 DF-------L L PM-------L Site 2040
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar DL-------A K KC-------L Site 2040
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. DL-------L S KM-------L Site 2040
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d DL-------L D HM-------L Site 2040
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. SL-------L H AM-------V Site 2040
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. DL-------C G KI-------F Site 2040
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G DL-------L S AL-------L Site 2040
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO DL-------L K RM-------L Site 2040
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C DF-------L D KL-------L Site 2040
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl HL-------L C RM-------L Site 2040
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 GL-------L K GC-------L Site 2040
Homo.sapiens.HIPK3..Homeodomain.interacting.protei SL-------L K KM-------L Site 2040
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O DL-------M N KF-------L Site 2040
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d DL-------M K NL-------L Site 2040
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci DL-------I E NM-------L Site 2040
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O DL-------M N KF-------L Site 2040
Naegleria.gruberi.LF4 DL-------L Q KL-------L Site 2040
Saccharomyces.bayanus.IME2 DV-------V K KC-------L Site 2040
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. DL-------L D KL-------L Site 2040
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a KV-------L D GM-------L Site 2040
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki DL-------I S KM-------L Site 2040
Dictyostelium.discoideum.DYRK1..Probable.serine.th DL-------I E KM-------L Site 2040
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos DL-------V L RM-------L Site 2040
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos DF-------L K QC-------L Site 2040
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d DL-------M K NL-------L Site 2040
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a DL-------L K RL-------L Site 2040
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific DV-------L K KC-------L Site 2040
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos DF-------L R RC-------L Site 2040
Aspergillus.nidulans.IME2 NF-------V T WC-------L Site 2040
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi DL-------L D KL-------L Site 2040
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se DL-------L Q KL-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. QL-------M T EM-------L Site 2040
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep SL-------L S QM-------L Site 2040
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. DL-------L S KM-------L Site 2040
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. DL-------V S RL-------L Site 2040
Penicillium.marneffei.IME2 NF-------V T WC-------L Site 2040
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen DL-------L E KM-------L Site 2040
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a DF-------L E KI-------L Site 2040
Drosophila.melanogaster.MAK DL-------L E DM-------L Site 2040
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH DL-------L E KC-------L Site 2040
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr DL-------L D QI-------L Site 2040
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de DL-------L D HM-------L Site 2040
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep DL-------L S KM-------I Site 2040
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d RL-------L N FL-------F Site 2040
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin DL-------L S KM-------L Site 2040
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a DL-------L S KM-------L Site 2040
Homo.sapiens.CLK1..Dual.specificity.protein.kinase DL-------I Q KM-------L Site 2040
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis DL-------L D KL-------L Site 2040
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 EV-------V M SC-------L Site 2040
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p DL-------L M KM-------L Site 2040
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen AL-------C S SL-------L Site 2040
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. DL-------L S KM-------L Site 2040
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki DF-------L D KL-------L Site 2040
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U DL-------V R RM-------L Site 2040
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a DF-------L E KI-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d DL-------L T KL-------L Site 2040
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. DF-------L D KL-------L Site 2040
Yarrowia.lipolytica.SSN3..Serine.threonine.protein QL-------L S RL-------L Site 2040
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. DL-------L E KM-------L Site 2040
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos DL-------V L RM-------L Site 2040
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE DF-------L D KL-------L Site 2040
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH DF-------I G ST-------L Site 2040
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD DL-------I S KI-------L Site 2040
Candida.orthopsilosis.IME2 DA-------I M SC-------L Site 2040
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot EL-------L R GL-------F Site 2040
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str DL-------L S RM-------L Site 2040
Debaryomyces.hansenii.IME2 EV-------V K AC-------L Site 2040
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati DL-------V S KL-------L Site 2040
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin SL-------L Y SL-------L Site 2040
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE DI-------L R EI-------L Site 2040
Caenorhabditis.briggsae.CDK1 SL-------L E GL-------L Site 2040
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO DF-------L D KL-------L Site 2040
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de DL-------L G QF-------L Site 2040
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos EF-------L K RC-------L Site 2040
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. DL-------L L KC-------L Site 2040
Monosiga.brevicollis.CDK1 DL-------L T KC-------L Site 2040
Saccharomyces.cerevisiae.SKY1 DF-------L S PM-------L Site 2040
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP DL-------L S RL-------L Site 2040
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U DL-------I K QC-------L Site 2040
Drosophila.melanogaster.GSK3..Protein.kinase.shagg NL-------V S LL-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. DL-------L R RL-------L Site 2040
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d SL-------A K KC-------L Site 2040
Dictyostelium.discoideum.CDK10..Probable.cyclin.de DL-------L N QL-------L Site 2040
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d DL-------M K NL-------L Site 2040
Ajellomyces.capsulatus.CDK1 DL-------L D AM-------L Site 2040
Dictystelium.discoideum.MAPK3..Extracellular.signa DL-------L E RM-------L Site 2040
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep DL-------L L KC-------L Site 2040
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep RL-------M N LL-------F Site 2040
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac DL-------L S KM-------L Site 2040
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. DL-------L D KM-------L Site 2040
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO DL-------L N KM-------L Site 2040
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri HL-------L C RM-------L Site 2040
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha DL-------L S KM-------L Site 2040
Saccharomyces.cerevisiae.CDK1 DL-------L D KL-------L Site 2040
Lodderomyces.elongisporus.IME2 QV-------I Q SC-------L Site 2040
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen DL-------L E KM-------L Site 2040
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un SL-------I E GM-------L Site 2040
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar DL-------M K NL-------L Site 2040
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. DL-------L Y HI-------M Site 2040
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D SL-------V K AL-------L Site 2040
Homo.sapiens.CLK4..Dual.specificity.protein.kinase DL-------V R RM-------L Site 2040
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U DL-------L K KM-------L Site 2040
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d GF-------L K GC-------L Site 2040
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen AL-------C S SL-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 SL-------L E GL-------L Site 2040
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep QL-------L L EM-------L Site 2040
Cryptococcus.neoformans.SSN3..Serine.threonine.pro DI-------L V KM-------F Site 2040
Salmo.salar.CDK1 EL-------L G QM-------L Site 2040
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d EL-------L Q GL-------F Site 2040
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d DL-------L G QF-------L Site 2040
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi DV-------L K CC-------L Site 2040
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen AL-------C S RL-------L Site 2040
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable NL-------L P LM-------L Site 1863
Aspergillus.fumigatus.IME2 SFYGEHPAAS S LA-------C Site 2038
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan HL-------L Q KL-------L Site 2040
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha DL-------M E RM-------L Site 2040
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha DL-------L D KM-------L Site 2040
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S DL-------L V KL-------L Site 2040
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma DL-------L K KM-------L Site 2040
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina DL-------L D RM-------L Site 2040
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d EL-------I T KF-------L Site 2040
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. RL-------L H FL-------F Site 2040
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de SL-------M K GC-------L Site 2040
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S NL-------L S KM-------L Site 2040
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. DL-------L E KM-------L Site 2040
Candida.glabrata.IME2 AV-------I K LC-------L Site 2040
Homo.sapiens.MAK..Serine.threonine.protein.kinase. QL-------M T EM-------L Site 2040
Schizosaccharomyces.pombe.IME2 SM-------L S QL-------L Site 2040
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P DL-------L E NL-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl DL-------L Q KL-------L Site 2040
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom EL-------I K RM-------L Site 2040
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d NL-------L S SL-------L Site 2040
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d SF-------M K GC-------L Site 2040
Branchiostoma.floridae.CDK1 EL-------F A QM-------L Site 2040
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara DL-------I E SM-------L Site 2040
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH DL-------L S KM-------L Site 2040
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD EF-------I R KC-------L Site 2040
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR DL-------I S KI-------I Site 2040
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. QL-------L R DM-------L Site 2040
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci DL-------M R RM-------L Site 2040
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos DL-------I L RM-------L Site 2040
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep SL-------L S QM-------L Site 2040
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act SL-------L G RM-------L Site 2040
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. DL-------L E KM-------L Site 2040
Lachancea.thermotolerans.SKY1 DF-------L M PM-------L Site 2040
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a DF-------L E QI-------L Site 2040
Dictyostelium.discoideum.CDK1 DL-------I A KM-------L Site 2040
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. NL-------L E RM-------L Site 2040
Xenopus.tropicalis.IME2 DL-------L A QM-------L Site 2040
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U DL-------L K KM-------L Site 2040
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. DF-------L D KL-------L Site 2040
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d DL-------L A QM-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara DL-------L A QL-------L Site 2040
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. DL-------A S QM-------L Site 2040
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD DL-------L K KL-------L Site 2040
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos DL-------I L RM-------L Site 2040
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen AL-------C S RL-------L Site 2040
Drosophila.melanogaster.GSK3H..Putative.glycogen.s DL-------V S KM-------L Site 2040
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD RL-------L N NM-------L Site 2040
Encephalitozoon.cuniculi.CDK1 DL-------I S KM-------L Site 2040
Saccharomyces.kluyveri.IME2 EV-------I K VC-------L Site 2040
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci DL-------V R RM-------L Site 2040
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a DL-------L D KM-------L Site 2040
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. DL-------A S QM-------L Site 2040
Cryptococcus.neoformans.IME2 DC-------I A DL-------L Site 2040
Homo.sapiens.HIPK4..Homeodomain.interacting.protei EL-------I K RM-------L Site 2040
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote DF-------L L PM-------L Site 2040
Candida.lusitaniae.IME2 ET-------I K YC-------F Site 2040
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom DL-------L K KM-------L Site 2040
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A HL-------L Q KL-------L Site 2040
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep DL-------L K KF-------L Site 2040
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. SL-------M K AC-------L Site 2040
Gallus.gallus.CDK2 KL-------L A QM-------L Site 2040
Emericella.nidulans.CDK1 DL-------L E AL-------L Site 2040
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. SL-------L H AM-------V Site 2040
Homo.sapiens.CDK1 DL-------L S KM-------L Site 2040
Candida.albicans.CDK1 DL-------L D QM-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca DF-------L D KL-------L Site 2040
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a SL-------L G RM-------L Site 2040
Mus.musculus.ICK..Serine.threonine.protein.kinase. QL-------L R DL-------L Site 2040
Saccharomyces.castelli.IME2 DV-------I K KC-------L Site 2040
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec DL-------I Q KM-------L Site 2040
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep EL-------I Q GL-------F Site 2040
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. DL-------A S KL-------L Site 2040
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly DL-------I S HL-------L Site 2040
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS QV-------L E QC-------F Site 2040
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli EL-------L K GL-------F Site 2040
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho DL-------I D KL-------L Site 2040
Homo.sapiens.HIPK2..Homeodomain.interacting.protei DL-------L K KM-------L Site 2040
Acyrthosiphon.pisum.CDK1 NV-------F Y AM-------C Site 2040
Candida.tropicalis.CDK1 DV-------I Q GC-------L Site 2040
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin HL-------L Q KL-------L Site 2040
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G DL-------V S RL-------L Site 2040
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR DF-------L D RL-------L Site 2040
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de DL-------L T KL-------L Site 2040
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 DF-------L D KL-------L Site 2040
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d EL-------I T KF-------L Site 2040
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA DL-------L D KM-------L Site 2040
Candida.albicans.SSN3..Serine.threonine.protein.ki EL-------L S GL-------L Site 2040
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF DL-------I N KL-------L Site 2040
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA QL-------C S RL-------L Site 2040
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara EL-------L E KM-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de SL-------C G AI-------L Site 2040
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei DF-------L D KL-------L Site 2040
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U AL-------L K KM-------L Site 2040
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d DL-------M N KF-------L Site 2040
Candida.dubliniensis.IME2 EV-------I Q SC-------L Site 2040
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a DL-------L S KM-------L Site 2040
Aspergillus.niger.IME2 QF-------V T WC-------L Site 2040
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge DL-------L E KM-------L Site 2040
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d DI-------V H AC-------L Site 2040
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. DL-------A S KL-------L Site 2040
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein DF-------L D KL-------L Site 2040
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty DL-------I K RM-------L Site 2040
Schizosaccharomyces.japonicus.IME2 SM-------L T AI-------L Site 2040
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. DL-------L S RM-------L Site 2040
Gallus.gallus.CDK1 DL-------L S KM-------L Site 2040
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep DL-------L Q NL-------L Site 2040
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P DL-------I T KL-------L Site 2040
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE DF-------F K RC-------L Site 2040
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. DL-------I S KI-------I Site 2040
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. NL-------L E KM-------L Site 2040
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ DL-------I D NL-------L Site 2040
Kluyveromyces.waltii.IME2 EV-------V K EC-------L Site 2040
Debaryomyces.hansenii.SKY1 DF-------L Q PM-------L Site 2040
Saccharomyces.cerevisiae.IME2 EV-------V K KC-------L Site 2040
Schizosaccharomyces.japonicus.b.IME2 KM-------I T EL-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un DL-------L I KC-------L Site 2040
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein DL-------L D KL-------L Site 2040
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a DF-------L E QI-------L Site 2040
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep DL-------L L KC-------L Site 2040
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST DL-------L T KT-------L Site 2040
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk NI-------L E KM-------L Site 2040
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de DI-------V H AC-------L Site 2040
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act DL-------L S KM-------L Site 2040
Candida.albicans.IME2 EV-------I Q SC-------L Site 2040
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d DL-------L L AM-------L Site 2040
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k DL-------L N KL-------L Site 2040
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. DL-------L E KM-------L Site 2040
Kluyveromyces.lactis.IME2 DV-------V T SC-------L Site 2040
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina SL-------L G RM-------L Site 2040
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. DL-------L S KM-------L Site 2040
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. DL-------L G RM-------L Site 2040
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. DL-------L G RM-------L Site 2040
Amphimedon.queenslandica.CDK1 NL-------L E QM-------L Site 2040
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d NF-------M K GC-------L Site 2040
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U DL-------L T QL-------L Site 2040
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME SL-------L Q GL-------L Site 2040
Neurospora.crassa.IME2 HF-------V T WC-------L Site 2040
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME DL-------L Q KL-------L Site 2040
Dictyostelium.discoideum.DYRK2..Probable.serine.th NF-------I L DC-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep QL-------L L EM-------L Site 2040
Hydra.magnipapillata.CDK1 DL-------L E KM-------L Site 2040
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar RL-------L N FL-------F Site 2040
Ashbya.gossypii.IME2 DV-------V R AC-------L Site 2040
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi DV-------L K CC-------L Site 2040
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos EF-------L K RC-------L Site 2040
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p EF-------L A DV-------L Site 2040
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace DL-------L Q RL-------L Site 2040
Schizosaccharomyces.pombe.b.IME2 KM-------I P CL-------L Site 2040
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a DL-------L D KM-------L Site 2040
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom NL-------L K KM-------L Site 2040
Schizosaccharomyces.pombe.CDK1 EL-------L S AM-------L Site 2040
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch DL-------I E SM-------L Site 2040
Saccoglossus.kowalevskii.CDK1 DL-------L R QM-------L Site 2040
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas GF-------S Y DYVFDWNMLK Site 2039
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac DL-------L S KM-------L Site 2040
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep DL-------L L RL-------L Site 2040
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable LL-------L P FM-------L Site 1897
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep DL-------L M QL-------L Site 2040
Yarrowia.lipolytica.IME2 DV-------V L MC-------L Site 2040
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil SL-------L Y HL-------L Site 2040
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli DL-------L G QM-------L Site 2040
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K DL-------L A KC-------F Site 2040
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly DL-------I A RL-------L Site 2040
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk DL-------L S KM-------L Site 2040
Species Residue at Site 3117
in 'msaprobs'
muscle

The residue for every species at site 3117 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro DL-------I K RM-------L Site 2040
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo HL-------L C RM-------L Site 2040
Scheffersomyces.stipitis.SKY1 DF-------L L PM-------L Site 2040
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep DL-------L Q NL-------L Site 2040

Generated by PhyloBot at 15:41, October 23rd 2019
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