cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 3116 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3116 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3116 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3116 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ASM------- L TEL------- Site 2039
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD EAF------- L LPM------- Site 2039
Danio.rerio.CDK1 RDL------- L GQM------- Site 2039
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge IDL------- V EKM------- Site 2039
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d RDL------- L QNL------- Site 2039
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK IDL------- L KKM------- Site 2039
Candida.guilliermondii.IME2 CDM------- I RIC------- Site 2039
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ NLS------- G PVNQTDSYAQ Site 2462
Chlamydomonas.reinhardtii.LF4 VDL------- I VKL------- Site 2039
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g MDL------- L HKM------- Site 2039
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 DLA------- Q GLPIQFGRYL Site 1869
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho FHL------- L QKL------- Site 2039
Schizosaccharomyces.octosporus.b.IME2 TEM------- I AQL------- Site 2039
Candida.albicans.MAPK3..Extracellular.signal.regul LDL------- L EKL------- Site 2039
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. IDY------- L DKL------- Site 2039
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 QAL------- Y RKKGFPDDYV Site 2029
Suberites.domuncula.JNK..Stress.activated.protein. RDL------- L SKM------- Site 2039
Homo.sapiens.CLK3..Dual.specificity.protein.kinase FDL------- M RRM------- Site 2039
Aedes.aegypti.CDK1 LDL------- L QKC------- Site 2039
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci FDL------- I GKM------- Site 2039
Homo.sapiens.CLK2..Dual.specificity.protein.kinase FDL------- I ESM------- Site 2039
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos LDF------- L RRC------- Site 2039
Homo.sapiens.HIPK1..Homeodomain.interacting.protei IDL------- L KKM------- Site 2039
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar LAL------- M KGC------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 INL------- L ENM------- Site 2039
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. LDL------- L DKL------- Site 2039
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM LDL------- L GKM------- Site 2039
Strongylocentrotus.purpuratus.CDK1 KDL------- L KSM------- Site 2039
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca REG------- Y QFDYVYDWTL Site 2012
Drosophila.melanogaster.CDK1 IDL------- I QKM------- Site 2039
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ISM------- F RELFVREGFD Site 1942
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH AEF------- L IPT------- Site 2039
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d IHL------- L SSL------- Site 2039
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. ESL------- A VQF------- Site 2039
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET RDL------- L SKM------- Site 2039
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 IDL------- A KKC------- Site 2039
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U RDL------- L SKM------- Site 2039
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ADL------- L EKM------- Site 2039
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo VHL------- L CRM------- Site 2039
Bombus.terrestris.CDK1 KDL------- L LKL------- Site 2039
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 TDF------- L LPM------- Site 2039
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar LDL------- A KKC------- Site 2039
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. RDL------- L SKM------- Site 2039
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d LDL------- L DHM------- Site 2039
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. LSL------- L HAM------- Site 2039
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. YDL------- C GKI------- Site 2039
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G YDL------- L SAL------- Site 2039
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO IDL------- L KRM------- Site 2039
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C IDF------- L DKL------- Site 2039
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl VHL------- L CRM------- Site 2039
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 LGL------- L KGC------- Site 2039
Homo.sapiens.HIPK3..Homeodomain.interacting.protei VSL------- L KKM------- Site 2039
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O FDL------- M NKF------- Site 2039
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d LDL------- M KNL------- Site 2039
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci FDL------- I ENM------- Site 2039
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O FDL------- M NKF------- Site 2039
Naegleria.gruberi.LF4 LDL------- L QKL------- Site 2039
Saccharomyces.bayanus.IME2 SDV------- V KKC------- Site 2039
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. LDL------- L DKL------- Site 2039
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a IKV------- L DGM------- Site 2039
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki IDL------- I SKM------- Site 2039
Dictyostelium.discoideum.DYRK1..Probable.serine.th LDL------- I EKM------- Site 2039
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos QDL------- V LRM------- Site 2039
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos LDF------- L KQC------- Site 2039
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d LDL------- M KNL------- Site 2039
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a LDL------- L KRL------- Site 2039
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific LDV------- L KKC------- Site 2039
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos LDF------- L RRC------- Site 2039
Aspergillus.nidulans.IME2 SNF------- V TWC------- Site 2039
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi YDL------- L DKL------- Site 2039
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se VDL------- L QKL------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. IQL------- M TEM------- Site 2039
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep RSL------- L SQM------- Site 2039
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. RDL------- L SKM------- Site 2039
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. VDL------- V SRL------- Site 2039
Penicillium.marneffei.IME2 ANF------- V TWC------- Site 2039
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen VDL------- L EKM------- Site 2039
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a IDF------- L EKI------- Site 2039
Drosophila.melanogaster.MAK LDL------- L EDM------- Site 2039
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH MDL------- L EKC------- Site 2039
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr KDL------- L DQI------- Site 2039
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de LDL------- L DHM------- Site 2039
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep YDL------- L SKM------- Site 2039
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d LRL------- L NFL------- Site 2039
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin RDL------- L SKM------- Site 2039
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a RDL------- L SKM------- Site 2039
Homo.sapiens.CLK1..Dual.specificity.protein.kinase FDL------- I QKM------- Site 2039
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis YDL------- L DKL------- Site 2039
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 CEV------- V MSC------- Site 2039
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p LDL------- L MKM------- Site 2039
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen IAL------- C SSL------- Site 2039
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. RDL------- L SKM------- Site 2039
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki LDF------- L DKL------- Site 2039
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U FDL------- V RRM------- Site 2039
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a IDF------- L EKI------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d ADL------- L TKL------- Site 2039
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. LDF------- L DKL------- Site 2039
Yarrowia.lipolytica.SSN3..Serine.threonine.protein FQL------- L SRL------- Site 2039
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. VDL------- L EKM------- Site 2039
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos QDL------- V LRM------- Site 2039
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE LDF------- L DKL------- Site 2039
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH MDF------- I GST------- Site 2039
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD IDL------- I SKI------- Site 2039
Candida.orthopsilosis.IME2 CDA------- I MSC------- Site 2039
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot LEL------- L RGL------- Site 2039
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str RDL------- L SRM------- Site 2039
Debaryomyces.hansenii.IME2 GEV------- V KAC------- Site 2039
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati VDL------- V SKL------- Site 2039
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin LSL------- L YSL------- Site 2039
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE LDI------- L REI------- Site 2039
Caenorhabditis.briggsae.CDK1 FSL------- L EGL------- Site 2039
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO LDF------- L DKL------- Site 2039
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de LDL------- L GQF------- Site 2039
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos IEF------- L KRC------- Site 2039
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. KDL------- L LKC------- Site 2039
Monosiga.brevicollis.CDK1 IDL------- L TKC------- Site 2039
Saccharomyces.cerevisiae.SKY1 SDF------- L SPM------- Site 2039
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP LDL------- L SRL------- Site 2039
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U LDL------- I KQC------- Site 2039
Drosophila.melanogaster.GSK3..Protein.kinase.shagg INL------- V SLL------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. LDL------- L RRL------- Site 2039
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ISL------- A KKC------- Site 2039
Dictyostelium.discoideum.CDK10..Probable.cyclin.de FDL------- L NQL------- Site 2039
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d LDL------- M KNL------- Site 2039
Ajellomyces.capsulatus.CDK1 LDL------- L DAM------- Site 2039
Dictystelium.discoideum.MAPK3..Extracellular.signa IDL------- L ERM------- Site 2039
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep KDL------- L LKC------- Site 2039
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep LRL------- M NLL------- Site 2039
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac RDL------- L SKM------- Site 2039
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ADL------- L DKM------- Site 2039
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO DDL------- L NKM------- Site 2039
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri VHL------- L CRM------- Site 2039
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha RDL------- L SKM------- Site 2039
Saccharomyces.cerevisiae.CDK1 IDL------- L DKL------- Site 2039
Lodderomyces.elongisporus.IME2 RQV------- I QSC------- Site 2039
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen VDL------- L EKM------- Site 2039
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un FSL------- I EGM------- Site 2039
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar LDL------- M KNL------- Site 2039
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. IDL------- L YHI------- Site 2039
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ISL------- V KAL------- Site 2039
Homo.sapiens.CLK4..Dual.specificity.protein.kinase FDL------- V RRM------- Site 2039
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U IDL------- L KKM------- Site 2039
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d LGF------- L KGC------- Site 2039
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen IAL------- C SSL------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 FSL------- L EGL------- Site 2039
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep AQL------- L LEM------- Site 2039
Cryptococcus.neoformans.SSN3..Serine.threonine.pro YDI------- L VKM------- Site 2039
Salmo.salar.CDK1 REL------- L GQM------- Site 2039
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d LEL------- L QGL------- Site 2039
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d LDL------- L GQF------- Site 2039
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi QDV------- L KCC------- Site 2039
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen IAL------- C SRL------- Site 2039
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable RNL------- L PLM------- Site 1862
Aspergillus.fumigatus.IME2 ASFYGEHPAA S SLA------- Site 2037
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan FHL------- L QKL------- Site 2039
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha FDL------- M ERM------- Site 2039
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha VDL------- L DKM------- Site 2039
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S VDL------- L VKL------- Site 2039
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma IDL------- L KKM------- Site 2039
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina LDL------- L DRM------- Site 2039
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d IEL------- I TKF------- Site 2039
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. LRL------- L HFL------- Site 2039
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de LSL------- M KGC------- Site 2039
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S RNL------- L SKM------- Site 2039
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. IDL------- L EKM------- Site 2039
Candida.glabrata.IME2 LAV------- I KLC------- Site 2039
Homo.sapiens.MAK..Serine.threonine.protein.kinase. IQL------- M TEM------- Site 2039
Schizosaccharomyces.pombe.IME2 ASM------- L SQL------- Site 2039
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P IDL------- L ENL------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl RDL------- L QKL------- Site 2039
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom VEL------- I KRM------- Site 2039
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d INL------- L SSL------- Site 2039
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d LSF------- M KGC------- Site 2039
Branchiostoma.floridae.CDK1 TEL------- F AQM------- Site 2039
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara FDL------- I ESM------- Site 2039
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH LDL------- L SKM------- Site 2039
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD LEF------- I RKC------- Site 2039
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR IDL------- I SKI------- Site 2039
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. VQL------- L RDM------- Site 2039
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci FDL------- M RRM------- Site 2039
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos KDL------- I LRM------- Site 2039
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep RSL------- L SQM------- Site 2039
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act LSL------- L GRM------- Site 2039
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. VDL------- L EKM------- Site 2039
Lachancea.thermotolerans.SKY1 SDF------- L MPM------- Site 2039
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a LDF------- L EQI------- Site 2039
Dictyostelium.discoideum.CDK1 LDL------- I AKM------- Site 2039
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. VNL------- L ERM------- Site 2039
Xenopus.tropicalis.IME2 RDL------- L AQM------- Site 2039
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U IDL------- L KKM------- Site 2039
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. LDF------- L DKL------- Site 2039
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d RDL------- L AQM------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara RDL------- L AQL------- Site 2039
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. EDL------- A SQM------- Site 2039
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD LDL------- L KKL------- Site 2039
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos KDL------- I LRM------- Site 2039
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen IAL------- C SRL------- Site 2039
Drosophila.melanogaster.GSK3H..Putative.glycogen.s IDL------- V SKM------- Site 2039
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD FRL------- L NNM------- Site 2039
Encephalitozoon.cuniculi.CDK1 VDL------- I SKM------- Site 2039
Saccharomyces.kluyveri.IME2 CEV------- I KVC------- Site 2039
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci FDL------- V RRM------- Site 2039
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a LDL------- L DKM------- Site 2039
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. EDL------- A SQM------- Site 2039
Cryptococcus.neoformans.IME2 VDC------- I ADL------- Site 2039
Homo.sapiens.HIPK4..Homeodomain.interacting.protei VEL------- I KRM------- Site 2039
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote TDF------- L LPM------- Site 2039
Candida.lusitaniae.IME2 AET------- I KYC------- Site 2039
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom IDL------- L KKM------- Site 2039
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A FHL------- L QKL------- Site 2039
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep VDL------- L KKF------- Site 2039
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. LSL------- M KAC------- Site 2039
Gallus.gallus.CDK2 RKL------- L AQM------- Site 2039
Emericella.nidulans.CDK1 LDL------- L EAL------- Site 2039
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. LSL------- L HAM------- Site 2039
Homo.sapiens.CDK1 LDL------- L SKM------- Site 2039
Candida.albicans.CDK1 IDL------- L DQM------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca LDF------- L DKL------- Site 2039
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a LSL------- L GRM------- Site 2039
Mus.musculus.ICK..Serine.threonine.protein.kinase. IQL------- L RDL------- Site 2039
Saccharomyces.castelli.IME2 LDV------- I KKC------- Site 2039
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec FDL------- I QKM------- Site 2039
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep LEL------- I QGL------- Site 2039
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. EDL------- A SKL------- Site 2039
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly LDL------- I SHL------- Site 2039
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS FQV------- L EQC------- Site 2039
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli LEL------- L KGL------- Site 2039
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho LDL------- I DKL------- Site 2039
Homo.sapiens.HIPK2..Homeodomain.interacting.protei IDL------- L KKM------- Site 2039
Acyrthosiphon.pisum.CDK1 QNV------- F YAM------- Site 2039
Candida.tropicalis.CDK1 QDV------- I QGC------- Site 2039
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin FHL------- L QKL------- Site 2039
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G IDL------- V SRL------- Site 2039
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR LDF------- L DRL------- Site 2039
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de ADL------- L TKL------- Site 2039
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 IDF------- L DKL------- Site 2039
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d IEL------- I TKF------- Site 2039
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA VDL------- L DKM------- Site 2039
Candida.albicans.SSN3..Serine.threonine.protein.ki LEL------- L SGL------- Site 2039
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF VDL------- I NKL------- Site 2039
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA IQL------- C SRL------- Site 2039
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara VEL------- L EKM------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de TSL------- C GAI------- Site 2039
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei LDF------- L DKL------- Site 2039
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U VAL------- L KKM------- Site 2039
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d FDL------- M NKF------- Site 2039
Candida.dubliniensis.IME2 IEV------- I QSC------- Site 2039
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a RDL------- L SKM------- Site 2039
Aspergillus.niger.IME2 SQF------- V TWC------- Site 2039
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge VDL------- L EKM------- Site 2039
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ADI------- V HAC------- Site 2039
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. EDL------- A SKL------- Site 2039
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein LDF------- L DKL------- Site 2039
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty KDL------- I KRM------- Site 2039
Schizosaccharomyces.japonicus.IME2 ASM------- L TAI------- Site 2039
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. RDL------- L SRM------- Site 2039
Gallus.gallus.CDK1 LDL------- L SKM------- Site 2039
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep RDL------- L QNL------- Site 2039
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P IDL------- I TKL------- Site 2039
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE LDF------- F KRC------- Site 2039
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. IDL------- I SKI------- Site 2039
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. VNL------- L EKM------- Site 2039
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ VDL------- I DNL------- Site 2039
Kluyveromyces.waltii.IME2 CEV------- V KEC------- Site 2039
Debaryomyces.hansenii.SKY1 ADF------- L QPM------- Site 2039
Saccharomyces.cerevisiae.IME2 SEV------- V KKC------- Site 2039
Schizosaccharomyces.japonicus.b.IME2 SKM------- I TEL------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un KDL------- L IKC------- Site 2039
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein LDL------- L DKL------- Site 2039
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a LDF------- L EQI------- Site 2039
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep KDL------- L LKC------- Site 2039
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST LDL------- L TKT------- Site 2039
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk VNI------- L EKM------- Site 2039
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ADI------- V HAC------- Site 2039
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act RDL------- L SKM------- Site 2039
Candida.albicans.IME2 IEV------- I QSC------- Site 2039
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ADL------- L LAM------- Site 2039
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k FDL------- L NKL------- Site 2039
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. VDL------- L EKM------- Site 2039
Kluyveromyces.lactis.IME2 YDV------- V TSC------- Site 2039
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina LSL------- L GRM------- Site 2039
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. RDL------- L SKM------- Site 2039
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. IDL------- L GRM------- Site 2039
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. IDL------- L GRM------- Site 2039
Amphimedon.queenslandica.CDK1 INL------- L EQM------- Site 2039
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d LNF------- M KGC------- Site 2039
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U RDL------- L TQL------- Site 2039
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME LSL------- L QGL------- Site 2039
Neurospora.crassa.IME2 AHF------- V TWC------- Site 2039
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME RDL------- L QKL------- Site 2039
Dictyostelium.discoideum.DYRK2..Probable.serine.th DNF------- I LDC------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep AQL------- L LEM------- Site 2039
Hydra.magnipapillata.CDK1 IDL------- L EKM------- Site 2039
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar LRL------- L NFL------- Site 2039
Ashbya.gossypii.IME2 CDV------- V RAC------- Site 2039
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi RDV------- L KCC------- Site 2039
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos IEF------- L KRC------- Site 2039
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p VEF------- L ADV------- Site 2039
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace LDL------- L QRL------- Site 2039
Schizosaccharomyces.pombe.b.IME2 AKM------- I PCL------- Site 2039
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a LDL------- L DKM------- Site 2039
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom VNL------- L KKM------- Site 2039
Schizosaccharomyces.pombe.CDK1 IEL------- L SAM------- Site 2039
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch FDL------- I ESM------- Site 2039
Saccoglossus.kowalevskii.CDK1 LDL------- L RQM------- Site 2039
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas QGF------- S YDYVFDWNML Site 2038
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac RDL------- L SKM------- Site 2039
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep KDL------- L LRL------- Site 2039
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable YLL------- L PFM------- Site 1896
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep RDL------- L MQL------- Site 2039
Yarrowia.lipolytica.IME2 TDV------- V LMC------- Site 2039
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil LSL------- L YHL------- Site 2039
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli RDL------- L GQM------- Site 2039
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K FDL------- L AKC------- Site 2039
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly IDL------- I ARL------- Site 2039
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk LDL------- L SKM------- Site 2039
Species Residue at Site 3116
in 'msaprobs'
muscle

The residue for every species at site 3116 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro KDL------- I KRM------- Site 2039
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo VHL------- L CRM------- Site 2039
Scheffersomyces.stipitis.SKY1 ADF------- L LPM------- Site 2039
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep RDL------- L QNL------- Site 2039

Generated by PhyloBot at 02:17, October 16th 2019
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