cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 3104 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3104 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3104 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3104 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ----PW--NG A FASM------ Site 2012
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ----QE--AK D FEAF------ Site 2012
Danio.rerio.CDK1 -----L--DE D GRDL------ Site 2012
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge -----V--HP E AIDL------ Site 2012
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d -----L--NA T GRDL------ Site 2012
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK -----L--SE T GIDL------ Site 2012
Candida.guilliermondii.IME2 ----S---YP F LCDM------ Site 2012
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ IEKATGEAGG R RNLS------ Site 2277
Chlamydomonas.reinhardtii.LF4 -----V--NP E CVDL------ Site 2012
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ----NC--TK N AMDL------ Site 2012
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 -IGEKKRLTN V YDLA------ Site 1851
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho -----P--DS K AFHL------ Site 2012
Schizosaccharomyces.octosporus.b.IME2 ----NC--DD M YTEM------ Site 2012
Candida.albicans.MAPK3..Extracellular.signal.regul -----I--NP L ALDL------ Site 2012
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. -----V--SP E AIDY------ Site 2012
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 EKPDYDYLRS I FQAL------ Site 1945
Suberites.domuncula.JNK..Stress.activated.protein. -----K--TR H GRDL------ Site 2012
Homo.sapiens.CLK3..Dual.specificity.protein.kinase -----E--HV Q LFDL------ Site 2034
Aedes.aegypti.CDK1 -----L--DS A GLDL------ Site 2012
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci -----E--HE L LFDL------ Site 2012
Homo.sapiens.CLK2..Dual.specificity.protein.kinase -----E--HH Q LFDL------ Site 2012
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos -----Y--DT S FLDF------ Site 2012
Homo.sapiens.HIPK1..Homeodomain.interacting.protei ----AD--RR E YIDL------ Site 2012
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar -----I--SY P ALAL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 -----I--DE D LINL------ Site 2012
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. -----V--SP E ALDL------ Site 2012
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM -----A--DA L ALDL------ Site 2012
Strongylocentrotus.purpuratus.CDK1 -----L--NK D GKDL------ Site 2012
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca SFLRHVFREL F EREG------ Site 2004
Drosophila.melanogaster.CDK1 -----L--DA N GIDL------ Site 2012
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 LKFEEKPDYQ Q VISM------ Site 1937
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ----AE--AK E FAEF------ Site 2012
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d -----L--DT D GIHL------ Site 2012
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. -----LVFIP H AESL------ Site 2012
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET -----K--AS Q ARDL------ Site 2012
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 -----L--SE V VIDL------ Site 2012
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U -----K--AS Q ARDL------ Site 2012
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. -----A--SP Q AADL------ Site 2012
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo -----A--TH E AVHL------ Site 2012
Bombus.terrestris.CDK1 -----F--DS D AKDL------ Site 2012
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ----EE--AA G FTDF------ Site 2012
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar -----L--SA S VLDL------ Site 2012
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. -----K--AS Q ARDL------ Site 2012
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d -----I--PS A ALDL------ Site 2012
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. -----L--SP Q CLSL------ Site 2012
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ----PL--PA E VYDL------ Site 2012
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ----KD--AK E AYDL------ Site 2012
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO ----TD--RR E FIDL------ Site 2012
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C -----V--SP E AIDF------ Site 2012
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl -----A--TH E AVHL------ Site 2012
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 -----I--SY P ALGL------ Site 2012
Homo.sapiens.HIPK3..Homeodomain.interacting.protei ----AD--RR E FVSL------ Site 2012
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ----LL--SD Q GFDL------ Site 2012
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d -----I--NG L MLDL------ Site 2012
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci -----D--HH Q LFDL------ Site 2012
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ----LL--SD Q GFDL------ Site 2012
Naegleria.gruberi.LF4 -----V--SK D CLDL------ Site 2012
Saccharomyces.bayanus.IME2 ----SQ--LS D LSDV------ Site 2012
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. -----V--SP E ALDL------ Site 2012
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a -----V--NP Q AIKV------ Site 2012
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki -----A--SD E AIDL------ Site 2012
Dictyostelium.discoideum.DYRK1..Probable.serine.th -----D--YL K FLDL------ Site 2034
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos -----D--YL R FQDL------ Site 2034
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos -----D--DP L FLDF------ Site 2012
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d -----L--NS V LLDL------ Site 2012
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ----DT--PP E ALDL------ Site 2026
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific -----P--EK D LLDV------ Site 2012
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos -----Y--DS S FLDF------ Site 2012
Aspergillus.nidulans.IME2 ---PQW--PA A LSNF------ Site 2012
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi -----V--PD E AYDL------ Site 2012
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se -----K--NH E AVDL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. -----A--SS E AIQL------ Site 2012
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep -----L--DE D GRSL------ Site 2012
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. -----K--AS Q ARDL------ Site 2012
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ----RM--PP E AVDL------ Site 2012
Penicillium.marneffei.IME2 ---PHW--PQ S LANF------ Site 2012
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen -----A--NP L AVDL------ Site 2012
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a -----V--NS E AIDF------ Site 2012
Drosophila.melanogaster.MAK -----C--SQ N GLDL------ Site 2012
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH -----I--RQ E LMDL------ Site 2012
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr -----K--VH Q LKDL------ Site 2012
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de -----I--PS A ALDL------ Site 2012
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep -----E--NS Q AYDL------ Site 1988
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d -----L--SE A GLRL------ Site 2012
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin -----K--AS Q ARDL------ Site 2012
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a -----K--TS Q ARDL------ Site 2012
Homo.sapiens.CLK1..Dual.specificity.protein.kinase -----E--HE R LFDL------ Site 2012
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis -----V--PD E AYDL------ Site 2012
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 ----A---GR E LCEV------ Site 2012
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p -----R--DP Q GLDL------ Site 2012
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ----RT--PP E AIAL------ Site 2012
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. -----K--TS Q ARDL------ Site 2012
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki -----V--SP E ALDF------ Site 2012
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U -----A--RL H LFDL------ Site 1993
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a -----V--NS E AIDF------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d -----L--DS D GADL------ Site 2012
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. -----V--SP E ALDF------ Site 2012
Yarrowia.lipolytica.SSN3..Serine.threonine.protein -----T--NQ K GFQL------ Site 2012
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. -----A--SD L AVDL------ Site 2012
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos -----D--YL R FQDL------ Site 2034
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE -----V--TP E ALDF------ Site 2012
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ----KT--PE D AMDF------ Site 2012
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD ---KDV--PA E SIDL------ Site 2012
Candida.orthopsilosis.IME2 ----A---GR E LCDA------ Site 2012
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot -----A--GD D LLEL------ Site 2012
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str -----T--AA K ARDL------ Site 2012
Debaryomyces.hansenii.IME2 ----S---VS E LGEV------ Site 2012
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ----RM--PP D AVDL------ Site 2012
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin -----R--DK A ALSL------ Site 2012
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE -----L--TG H GLDI------ Site 2012
Caenorhabditis.briggsae.CDK1 -----M--DE D AFSL------ Site 2012
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO -----V--SP E ALDF------ Site 2012
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de -----A--SP Q ALDL------ Site 2012
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos -----G--DY L FIEF------ Site 2012
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. -----I--DD M GKDL------ Site 2012
Monosiga.brevicollis.CDK1 -----L--DE D GIDL------ Site 2012
Saccharomyces.cerevisiae.SKY1 ----DE--AK E ISDF------ Site 2012
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP -----A--NP L GLDL------ Site 2012
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U -----L--PP L LLDL------ Site 2012
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ----RT--PT E AINL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ----DT--SP E ALDL------ Site 2012
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d -----L--PE A VISL------ Site 2012
Dictyostelium.discoideum.CDK10..Probable.cyclin.de -----I--SD T AFDL------ Site 2012
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d -----L--NS V LLDL------ Site 2012
Ajellomyces.capsulatus.CDK1 -----L--ER N GLDL------ Site 2012
Dictystelium.discoideum.MAPK3..Extracellular.signa -----A--NP D AIDL------ Site 2012
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep -----I--DE L GKDL------ Site 2012
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep -----L--SE A GLRL------ Site 2012
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac -----K--AS Q ARDL------ Site 2012
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. -----A--SP Q AADL------ Site 2012
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO -----L--CK Y ADDL------ Site 1946
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri -----A--TH E AVHL------ Site 2012
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha -----K--AS Q ARDL------ Site 2012
Saccharomyces.cerevisiae.CDK1 -----L--DP R GIDL------ Site 2012
Lodderomyces.elongisporus.IME2 ----IK--DN S LRQV------ Site 2012
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen -----A--NP Q AVDL------ Site 2012
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un -----E--HH Q LFSL------ Site 2012
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar -----L--SG V LLDL------ Site 2012
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. -----E--TQ E TIDL------ Site 2012
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D -----C--CD D GISL------ Site 2012
Homo.sapiens.CLK4..Dual.specificity.protein.kinase -----E--HE K LFDL------ Site 2012
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U ----AD--RR E FIDL------ Site 2012
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d -----I--SY S ALGF------ Site 2012
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ---SKT--PP E AIAL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 -----L--DD T AFSL------ Site 2012
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep -----M--EE S GAQL------ Site 2012
Cryptococcus.neoformans.SSN3..Serine.threonine.pro -----N--SS E GYDI------ Site 2010
Salmo.salar.CDK1 -----L--DD D GREL------ Site 2012
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d -----A--GD D LLEL------ Site 2012
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d -----V--SP Q ALDL------ Site 2012
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi -----P--EK D LQDV------ Site 2012
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ----RT--PP E AIAL------ Site 2012
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable --------VE T FRNL------ Site 1857
Aspergillus.fumigatus.IME2 ---NVG--RT D GASFYGEHPA Site 2000
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan -----P--DS K AFHL------ Site 2012
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha -----E--HH H FFDL------ Site 2012
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha -----A--NP Q AVDL------ Site 2012
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S -----T--TD D AVDL------ Site 2012
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma ----AD--RR E FIDL------ Site 2012
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina -----S--DS K ALDL------ Site 2012
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d -----L--DS E GIEL------ Site 2012
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. -----L--SE A GLRL------ Site 2012
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de -----L--SY Q ALSL------ Site 2012
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S -----K--AS D ARNL------ Site 2012
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. -----A--NP I AIDL------ Site 2012
Candida.glabrata.IME2 ----NQ--LT D LLAV------ Site 2012
Homo.sapiens.MAK..Serine.threonine.protein.kinase. -----A--SN E AIQL------ Site 2012
Schizosaccharomyces.pombe.IME2 ----PW--NL A FASM------ Site 2012
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P NPNVQI--NP L AIDL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl -----L--SS K GRDL------ Site 2012
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ----AD--LK S MVEL------ Site 2034
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d -----L--DT E GINL------ Site 2012
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d -----V--QP V ALSF------ Site 2012
Branchiostoma.floridae.CDK1 -----L--EP E GTEL------ Site 2012
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara -----D--HH R LFDL------ Site 2012
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ----SV--PL D ALDL------ Site 2012
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD -----N--LP V ELEF------ Site 2012
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ----HT--PA E AIDL------ Site 2012
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. -----A--SS E AVQL------ Site 2012
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci -----E--HV Q LFDL------ Site 2012
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos -----D--YL K FKDL------ Site 2034
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep -----L--DE D GRSL------ Site 2012
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act -----A--DR Q ALSL------ Site 2012
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. -----A--NP L AVDL------ Site 2012
Lachancea.thermotolerans.SKY1 ----ED--AE T ISDF------ Site 2012
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a -----I--SR E ALDF------ Site 2012
Dictyostelium.discoideum.CDK1 -----C--EP L ALDL------ Site 2012
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. -----A--SP Q AVNL------ Site 2012
Xenopus.tropicalis.IME2 -----L--DD D GRDL------ Site 2012
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U ----AD--RR E YIDL------ Site 2012
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. -----V--SP E ALDF------ Site 2012
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d -----L--DE D GRDL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara -----L--DR H GRDL------ Site 2012
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. ---LGG--VP E AEDL------ Site 2012
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD -----A--SV D ALDL------ Site 2012
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos -----D--YL K FKDL------ Site 2034
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ----RT--PP E AIAL------ Site 2012
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ----RT--PA E AIDL------ Site 2012
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD -----W-NSD A GFRL------ Site 2034
Encephalitozoon.cuniculi.CDK1 -----G--DP D FVDL------ Site 2012
Saccharomyces.kluyveri.IME2 ----PL--LR K LCEV------ Site 2012
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci -----E--HE K LFDL------ Site 2012
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a -----A--DS K ALDL------ Site 2012
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. ---LGR--VP E AEDL------ Site 2012
Cryptococcus.neoformans.IME2 ----SV--PQ S LVDC------ Site 2012
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ----AD--LK S MVEL------ Site 2034
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ----EE--AA G FTDF------ Site 2034
Candida.lusitaniae.IME2 ----S---YH E LAET------ Site 2012
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom ----AD--RR E YIDL------ Site 2012
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A -----P--DS K AFHL------ Site 2012
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep -----T--SP Q AVDL------ Site 2012
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. -----I--SS Q ALSL------ Site 2012
Gallus.gallus.CDK2 -----L--DE E GRKL------ Site 2012
Emericella.nidulans.CDK1 -----L--EE D GLDL------ Site 2012
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. -----L--SP Q CLSL------ Site 2012
Homo.sapiens.CDK1 -----L--DE N GLDL------ Site 2012
Candida.albicans.CDK1 -----L--DA N GIDL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca -----V--ST E ALDF------ Site 2012
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a -----A--DR Q ALSL------ Site 2012
Mus.musculus.ICK..Serine.threonine.protein.kinase. -----A--SS E AIQL------ Site 2012
Saccharomyces.castelli.IME2 ----PE--LY D LLDV------ Site 2012
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec -----D--HD Q LFDL------ Site 2012
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep -----A--GD D LLEL------ Site 2012
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. ---LSY--VN H AEDL------ Site 2012
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ----RL--KD E ALDL------ Site 2012
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS -----D--HY W CFQV------ Site 2034
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli -----A--GD D LLEL------ Site 2012
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho -----R--DP Y ALDL------ Site 2012
Homo.sapiens.HIPK2..Homeodomain.interacting.protei ----AD--RR E FIDL------ Site 2012
Acyrthosiphon.pisum.CDK1 -----L-SDK N QQNV------ Site 2012
Candida.tropicalis.CDK1 ----PD--GN A LQDV------ Site 2012
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin -----P--DS K AFHL------ Site 2012
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ----RT--SP E AIDL------ Site 2012
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR -----V--SP E ALDF------ Site 2012
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de -----L--DS D GADL------ Site 2012
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 -----V--SP E AIDF------ Site 2012
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d -----L--DS E GIEL------ Site 2012
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA -----A--NP Q AVDL------ Site 2012
Candida.albicans.SSN3..Serine.threonine.protein.ki -----N--SE K CLEL------ Site 2010
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF -----A--PP E CVDL------ Site 2012
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ----RT--PA D AIQL------ Site 2012
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara -----A--SK K AVEL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de -----F--GK E MTSL------ Site 2012
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei -----V--SP E ALDF------ Site 2012
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U ----AD--RR E FVAL------ Site 2012
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ----LL--SD Q GFDL------ Site 2012
Candida.dubliniensis.IME2 ----PD--SL A LIEV------ Site 2012
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a -----K--TS Q ARDL------ Site 2012
Aspergillus.niger.IME2 ---PQW--PA A LSQF------ Site 2012
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge -----A--NP Q AVDL------ Site 2012
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d -----L--NG L LADI------ Site 2012
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. ---LSY--VN H AEDL------ Site 2012
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein -----V--SP E ALDF------ Site 2012
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty -----D--YS K FKDL------ Site 2012
Schizosaccharomyces.japonicus.IME2 ----PW--NN T FASM------ Site 2012
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. -----T--GA Q ARDL------ Site 2012
Gallus.gallus.CDK1 -----L--DE D GLDL------ Site 2012
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep -----L--NA T GRDL------ Site 2012
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P -----A--DA N AIDL------ Site 2012
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE -----M--SA A ALDF------ Site 2012
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ----HT--PA E AIDL------ Site 2012
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. -----A--SP L AVNL------ Site 2012
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ -----A--VP E VVDL------ Site 2012
Kluyveromyces.waltii.IME2 ----PH--LQ E LCEV------ Site 2012
Debaryomyces.hansenii.SKY1 ----AD--AV E IADF------ Site 2012
Saccharomyces.cerevisiae.IME2 ----SQ--LS D LSEV------ Site 2012
Schizosaccharomyces.japonicus.b.IME2 ----EW--HG A HSKM------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un -----I--DE Q GKDL------ Site 2012
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein -----V--SP E VLDL------ Site 2012
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a -----I--SR E ALDF------ Site 2012
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep -----I--DE L GKDL------ Site 2012
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST -----E--DP D TLDL------ Site 2012
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk -----A--NP L AVNI------ Site 2012
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de -----L--NG L LADI------ Site 2012
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act -----K--AS Q ARDL------ Site 2012
Candida.albicans.IME2 ----PD--SL A LIEV------ Site 2012
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d -----I--DA M GADL------ Site 2012
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k -----I--TD N AFDL------ Site 2012
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. -----A--NP L AVDL------ Site 2012
Kluyveromyces.lactis.IME2 ----PQ--LE D LYDV------ Site 2012
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina -----A--DR Q ALSL------ Site 2012
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. -----K--AS Q ARDL------ Site 2012
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. -----A--NP L AIDL------ Site 2012
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. -----A--NP L AIDL------ Site 2012
Amphimedon.queenslandica.CDK1 -----L--DT L GINL------ Site 2012
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d -----V--HP V ALNF------ Site 2012
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U -----L--DR D GRDL------ Site 2012
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME -----T--SE M GLSL------ Site 2012
Neurospora.crassa.IME2 ---PQW--PA S LAHF------ Site 2012
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME -----L--NS K GRDL------ Site 2012
Dictyostelium.discoideum.DYRK2..Probable.serine.th -----G--DE D FDNF------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep -----M--EE S GAQL------ Site 2012
Hydra.magnipapillata.CDK1 -----L--DE N GIDL------ Site 2012
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar -----L--SE A GLRL------ Site 2012
Ashbya.gossypii.IME2 ----PQ--LE S LCDV------ Site 2012
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi -----S--EK D LRDV------ Site 2012
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos -----D--DY L FIEF------ Site 2012
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p -----E--DD Q TVEF------ Site 2012
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ----SV--PP D ALDL------ Site 2012
Schizosaccharomyces.pombe.b.IME2 ----NC--PE G HAKM------ Site 2012
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a -----A--DS K ALDL------ Site 2012
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom ----AD--RR E FVNL------ Site 2012
Schizosaccharomyces.pombe.CDK1 -----G--EE D AIEL------ Site 2012
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch -----E--HH Q LFDL------ Site 2012
Saccoglossus.kowalevskii.CDK1 -----L--DM D GLDL------ Site 2012
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas YLRQLFRNLF H RQGF------ Site 2011
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac -----K--AS Q ARDL------ Site 2012
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep -----L--GP E GKDL------ Site 2012
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable --------TD V YYLL------ Site 1891
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep -----L--EP E GRDL------ Site 2012
Yarrowia.lipolytica.IME2 ----PE--HA S LTDV------ Site 2012
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil -----R--DK H ALSL------ Site 2012
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli -----L--DE D GRDL------ Site 2012
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K -----D--HF W CFDL------ Site 2034
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly -----A--DA D AIDL------ Site 2012
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ----SV--PL D ALDL------ Site 2012
Species Residue at Site 3104
in 'msaprobs'
muscle

The residue for every species at site 3104 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro -----D--YS K FKDL------ Site 2026
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo -----A--TH E AVHL------ Site 2012
Scheffersomyces.stipitis.SKY1 ----QD--AM D VADF------ Site 2012
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep -----L--NA T GRDL------ Site 2012

Generated by PhyloBot at 15:55, October 23rd 2019
Questions/Comments? help@phylobot.com