cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 3000 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 3000 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 3000 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 3000 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 ------I--- L P----K-S-- Site 1908
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ------D--- Q W--------- Site 1916
Danio.rerio.CDK1 ------S--- F P----K-W-- Site 1932
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ------Q--- L P----P-Y-- Site 1934
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ------P--- Y P----M-Y-- Site 1908
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ------P--- F P----R-F-- Site 1908
Candida.guilliermondii.IME2 ------S--- F P----E-G-- Site 1908
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---------- - ----------  
Chlamydomonas.reinhardtii.LF4 ------N--- F P----P-K-- Site 1908
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ------S--- L P----N-V-- Site 1932
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---------- - ----------  
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho --TYTNC--- S L--------- Site 1941
Schizosaccharomyces.octosporus.b.IME2 ------S--- F S----A-T-- Site 1908
Candida.albicans.MAPK3..Extracellular.signal.regul ------S--- L P----F-C-- Site 1908
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ---------- L EALVGR-H-- Site 1868
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---------- - ----------  
Suberites.domuncula.JNK..Stress.activated.protein. ------S--- Q P----R-Y-- Site 1932
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ------V--- K E----N---- Site 1932
Aedes.aegypti.CDK1 ------T--- F P----C-W-- Site 1908
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ------V--- S R----R---- Site 1910
Homo.sapiens.CLK2..Dual.specificity.protein.kinase ------V--- R E----N---- Site 1910
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ------R--- Y P----D---- Site 1932
Homo.sapiens.HIPK1..Homeodomain.interacting.protei DMAQVNMSTD L E--------- Site 1995
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar ------T--- I P----D-P-- Site 1910
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ------S--- F P----K-Y-- Site 1908
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ---------- F NDILGQ-H-- Site 1893
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM ------S--- L P----F-K-- Site 1908
Strongylocentrotus.purpuratus.CDK1 ------S--- F P----R-W-- Site 1908
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---------- - ----------  
Drosophila.melanogaster.CDK1 ------T--- F P----C-W-- Site 1908
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------- - ----------  
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ------K--- Y W--------- Site 1908
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d ------S--- F P----C-Y-- Site 1932
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. -----KKFVM Y P----K-L-- Site 1908
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ------N--- R P----K-Y-- Site 1932
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 ------R--- L P----E-I-- Site 1908
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ------N--- R P----K-Y-- Site 1932
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ------S--- L P----Q-T-- Site 1908
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo ------R--- G P----H-K-- Site 1932
Bombus.terrestris.CDK1 ------M--- F P----R-W-- Site 1908
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ------K--- P W--------- Site 1911
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar ------R--- L P----E-V-- Site 1908
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ------N--- R P----K-Y-- Site 1932
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d ---------- K P----KKQ-- Site 1932
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ------D--- F P----F-K-- Site 1908
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ------I--- N A----N-A-- Site 1933
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ------D--- L Y----N-S-- Site 1932
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO YRDVDST--- Y P----F-WRL Site 1908
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ---------- L EALVGR-H-- Site 1893
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl ------R--- G P----H-K-- Site 1932
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 ------K--- I P----D-P-- Site 1932
Homo.sapiens.HIPK3..Homeodomain.interacting.protei DVAHVNTVMD L E--------- Site 1995
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ------T--- F S----E-H-- Site 1932
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ------R--- F P----S-V-- Site 1908
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci ------V--- R E----N---- Site 1932
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ------T--- F S----E-H-- Site 1932
Naegleria.gruberi.LF4 ------K--- F P----K-R-- Site 1908
Saccharomyces.bayanus.IME2 ------K--- L P----D-V-- Site 1932
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ---------- F NDILGQ-H-- Site 1893
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ------K--- L P----R-F-- Site 1908
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki ------K--- F T----D-H-- Site 1932
Dictyostelium.discoideum.DYRK1..Probable.serine.th ------V--- E F----C---- Site 1936
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos ------Q--- G P----G---- Site 1984
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos ------G--- P P----E---- Site 1932
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d ------R--- F P----A-V-- Site 1908
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ------N--- L G----S-R-- Site 1932
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific ------D--- F P----D-I-- Site 1868
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos ------R--- Y P----D---- Site 1932
Aspergillus.nidulans.IME2 ------T--- F P----K-M-- Site 1932
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi SASGPPGNAS Y D--------- Site 1893
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ------A--- G L------R-- Site 1936
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ------R--- F P----Q-C-- Site 1908
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ------S--- F P----K-W-- Site 1932
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ------N--- R P----K-Y-- Site 1932
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ------K--- F P----Q-I-- Site 1932
Penicillium.marneffei.IME2 ------T--- F P----K-M-- Site 1908
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ------S--- L P----H-M-- Site 1910
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ------T--- W E--------- Site 1932
Drosophila.melanogaster.MAK ------R--- Y P----D-C-- Site 1932
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ------Q--- E T----R---- Site 1907
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ------R--- E K----V---- Site 1903
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de ---------- K P----KKQ-- Site 1932
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep --SSMEA--- F P--------- Site 1908
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ------S--- L R----K-Q-- Site 1932
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ------N--- R P----K-Y-- Site 1932
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ------N--- R P----K-Y-- Site 1932
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ------V--- S R----R---- Site 1990
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis TSDIQGHASH Q P--------- Site 1893
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 ------S--- L P----F-D-- Site 1908
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p -----FE--- V R----Y-W-- Site 1939
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ------K--- F P----Q-I-- Site 1932
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ------N--- R P----K-Y-- Site 1932
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ---------- F NDILGR-H-- Site 1893
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ------Y--- R R----R---- Site 1911
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ------T--- W E--------- Site 1932
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d ------N--- Y P----K-Y-- Site 1932
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ---------- F NDILGR-H-- Site 1893
Yarrowia.lipolytica.SSN3..Serine.threonine.protein -----KQ--- M K----T-F-- Site 1905
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ------S--- L P----K-I-- Site 1932
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ------Q--- G P----G---- Site 1984
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ---------- F NDILGR-H-- Site 1893
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ------K--- F P----S-I-- Site 1932
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD ------K--- F P----E-I-- Site 1908
Candida.orthopsilosis.IME2 ------S--- L P----F-D-- Site 1908
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot ------S--- F K----P-F-- Site 1932
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ------N--- R Q----K-Y-- Site 1932
Debaryomyces.hansenii.IME2 ------S--- L P----Y-T-- Site 1908
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ------K--- F P----Q-I-- Site 1932
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin -----SK--- F S----K-Y-- Site 1908
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE ------V--- F P----Q-W-- Site 1908
Caenorhabditis.briggsae.CDK1 ------T--- F P----K-W-- Site 1908
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ---------- F HDILQR-H-- Site 1893
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ------S--- F K----E-Q-- Site 1932
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ------G--- P P----G---- Site 1936
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ------A--- F A----S-R-- Site 1893
Monosiga.brevicollis.CDK1 ------T--- F P----K-W-- Site 1908
Saccharomyces.cerevisiae.SKY1 ------K--- F W--------- Site 1908
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ------S--- M T----P-R-- Site 1933
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ------K--- V P----E-V-- Site 1908
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ------K--- F P----Q-I-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ------Q--- L G----S-R-- Site 1933
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ------R--- L P----E-V-- Site 1910
Dictyostelium.discoideum.CDK10..Probable.cyclin.de -----NN--- I P----H-Q-- Site 1910
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d ------R--- F P----A-V-- Site 1908
Ajellomyces.capsulatus.CDK1 ------S--- F P----K-W-- Site 1908
Dictystelium.discoideum.MAPK3..Extracellular.signa ------N--- M G----N-Q-- Site 1908
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ------A--- F H----S-K-- Site 1893
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ------S--- L R----K-Q-- Site 1932
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ------N--- R P----K-Y-- Site 1933
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ------S--- L P----Q-S-- Site 1908
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ------H--- F P----Q-R-- Site 1893
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri ------R--- G P----H-K-- Site 1893
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ------N--- R P----K-Y-- Site 1932
Saccharomyces.cerevisiae.CDK1 ------S--- F P----Q-W-- Site 1932
Lodderomyces.elongisporus.IME2 ------E--- L P----N-E-- Site 1908
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen ------S--- L P----Q-M-- Site 1932
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un ------V--- R E----N---- Site 1932
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar ------R--- F P----A-V-- Site 1908
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ------K--- F P----Q-I-- Site 1932
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D -VLLSRN--- I Q----R-D-- Site 1932
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ------V--- R R----R---- Site 1936
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U DMAQVNMASD L E--------- Site 1995
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d ------K--- I P----D-P-- Site 1910
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ------K--- F P----Q-I-- Site 1932
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ------T--- F P----K-W-- Site 1908
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ------A--- F P----P-R-- Site 1932
Cryptococcus.neoformans.SSN3..Serine.threonine.pro -----GP--- Y P----H---- Site 1908
Salmo.salar.CDK1 ------S--- F P----K-W-- Site 1932
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d ------A--- F K----S-F-- Site 1932
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ------S--- F K----E-Q-- Site 1932
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ------E--- F P----D-I-- Site 1868
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ------K--- F P----Q-I-- Site 1932
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable ---------Q I P--------- Site 1820
Aspergillus.fumigatus.IME2 ------T--- F P----K-V-- Site 1908
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan --TYTNC--- S L--------- Site 1941
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ------V--- K S----K---- Site 1932
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ------S--- L P----K-M-- Site 1908
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S ------A--- G P------R-- Site 1936
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma DMAQVNMTTD L E--------- Site 1995
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina ------S--- L P----S-K-- Site 1908
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d ------N--- F P----K-Y-- Site 1932
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ------S--- L R----K-Q-- Site 1932
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de ------C--- V P----E-P-- Site 1910
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ------N--- R P----R-Y-- Site 1933
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ------T--- L P----K-M-- Site 1908
Candida.glabrata.IME2 ------K--- F P----Y-V-- Site 1908
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ------R--- F P----Q-C-- Site 1908
Schizosaccharomyces.pombe.IME2 ------S--- L P----K-M-- Site 1908
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ------S--- L P----F-C-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ------A--- L P----H-F-- Site 1908
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom NGGGAVSRLS F P--------- Site 2008
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d ------N--- F P----R-Y-- Site 1932
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ------S--- I P----E-P-- Site 1910
Branchiostoma.floridae.CDK1 ------T--- F P----R-W-- Site 1908
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara ------V--- R D----N---- Site 1910
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ------R--- F P----Q-I-- Site 1932
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD ------R--- F P----E-K-- Site 1908
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ------K--- F P----Q-I-- Site 1932
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ------R--- W P----Q-C-- Site 1932
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ------V--- K E----N---- Site 1932
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos ------K--- P P----G---- Site 1984
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ------S--- F P----K-W-- Site 1932
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act ------S--- L P----P-R-- Site 1908
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. ------S--- L T----Q-M-- Site 1933
Lachancea.thermotolerans.SKY1 ------K--- F W--------- Site 1908
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ------M--- T E--------- Site 1936
Dictyostelium.discoideum.CDK1 ------T--- F P----N-W-- Site 1908
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ------G--- L P----E-L-- Site 1908
Xenopus.tropicalis.IME2 ------T--- F P----K-W-- Site 1932
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U DMAQVNMSTD L E--------- Site 1995
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ---------- F NDILGR-H-- Site 1893
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ------T--- F P----K-W-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ------D--- F P----Q-W-- Site 1908
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. ------W--- F P----P-P-- Site 1933
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ------S--- L P----P-S-- Site 1908
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos ------K--- P P----G---- Site 1984
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ------K--- F P----Q-I-- Site 1932
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ------K--- L P----E-L-- Site 1908
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ------S--- L R----Q-Q-- Site 1893
Encephalitozoon.cuniculi.CDK1 ------E--- F P----V-W-- Site 1932
Saccharomyces.kluyveri.IME2 ------K--- F P----Y-V-- Site 1908
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ------V--- R R----R---- Site 1932
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a ------S--- L P----H-K-- Site 1910
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. ------W--- F P----L-P-- Site 1932
Cryptococcus.neoformans.IME2 ------S--- F P----K-R-- Site 1908
Homo.sapiens.HIPK4..Homeodomain.interacting.protei NGGSVASRLT F P--------- Site 2008
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ------K--- P W--------- Site 1911
Candida.lusitaniae.IME2 ------T--- M P----Y-A-- Site 1908
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom DMAQVNMSTD L E--------- Site 1995
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A --NYANC--- S L--------- Site 1941
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep ------T--- F K----E-N-- Site 1932
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. ------S--- I P----E-P-- Site 1910
Gallus.gallus.CDK2 ------S--- F P----K-W-- Site 1932
Emericella.nidulans.CDK1 ------T--- F P----K-W-- Site 1932
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ------D--- F P----F-K-- Site 1908
Homo.sapiens.CDK1 ------T--- F P----K-W-- Site 1908
Candida.albicans.CDK1 ------S--- F P----Q-W-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ---------- F NDILGR-H-- Site 1893
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a ------S--- L P----P-R-- Site 1908
Mus.musculus.ICK..Serine.threonine.protein.kinase. ------L--- W P----Q-C-- Site 1932
Saccharomyces.castelli.IME2 ------E--- F P----F-V-- Site 1908
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ------V--- R K----H---- Site 1932
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep ------T--- F K----S-F-- Site 1932
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. ------R--- F T----V-Y-- Site 1932
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ------K--- F P----Q-I-- Site 1932
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS LLNKECTIGT F P--------- Site 1908
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli ------S--- F K----L-F-- Site 1932
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho ------E--- L V----K-G-- Site 1933
Homo.sapiens.HIPK2..Homeodomain.interacting.protei DMAQVNMTTD L E--------- Site 1995
Acyrthosiphon.pisum.CDK1 ------L--- F P----L-W-- Site 1908
Candida.tropicalis.CDK1 ------K--- L P----A-E-- Site 1932
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin --TYSTC--- S L--------- Site 1941
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ------K--- F P----Q-I-- Site 1908
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ---------- F NDILGR-H-- Site 1893
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de ------N--- Y P----K-Y-- Site 1932
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ---------- L EALVGR-H-- Site 1893
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d ------N--- F P----K-Y-- Site 1932
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA ------S--- L P----K-M-- Site 1908
Candida.albicans.SSN3..Serine.threonine.protein.ki TQHFNQN--- Y P--------- Site 1908
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF ------N--- F P----Q-K-- Site 1932
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ------K--- F P----Q-I-- Site 1908
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara ------S--- L P----H-Y-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de -----RS--- F P----S-H-- Site 1908
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ---------- F NDILGR-H-- Site 1893
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U EIVHVNMMVD L D--------- Site 1995
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ------T--- F S----E-Y-- Site 1932
Candida.dubliniensis.IME2 ------K--- L P----D-E-- Site 1932
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ------N--- R P----K-Y-- Site 1933
Aspergillus.niger.IME2 ------T--- F P----K-M-- Site 1932
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge ------S--- L P----Y-M-- Site 1910
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ------V--- L P----Q-V-- Site 1908
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. ------R--- F T----L-Y-- Site 1932
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ---------- F NDILGR-H-- Site 1893
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty ------K--- A P----G---- Site 1936
Schizosaccharomyces.japonicus.IME2 ------Q--- L P----T-N-- Site 1908
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ------N--- R P----R-Y-- Site 1932
Gallus.gallus.CDK1 ------T--- F P----K-W-- Site 1908
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ------P--- Y P----M-Y-- Site 1932
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ------K--- F P----Q-I-- Site 1932
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ------T--- F P----H-Y-- Site 1908
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ------K--- F P----Q-I-- Site 1932
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ------G--- L P----E-L-- Site 1908
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ---------- Y DNIMRD-F-- Site 1893
Kluyveromyces.waltii.IME2 ------K--- F P----Y-V-- Site 1908
Debaryomyces.hansenii.SKY1 ------K--- P W--------- Site 1911
Saccharomyces.cerevisiae.IME2 ------K--- L P----Y-V-- Site 1908
Schizosaccharomyces.japonicus.b.IME2 ------A--- F P----D-Y-- Site 1908
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ------A--- F H----F-R-- Site 1893
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ---------- F NDILGQ-H-- Site 1893
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ------M--- T E--------- Site 1936
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ------A--- F H----S-K-- Site 1893
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST ------V--- F P----N-I-- Site 1932
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ------S--- L P----K-V-- Site 1932
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ------V--- L P----Q-V-- Site 1908
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ------N--- R P----R-Y-- Site 1933
Candida.albicans.IME2 ------K--- L P----D-E-- Site 1932
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ------A--- F S----P-R-- Site 1893
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ------N--- L T----D-Q-- Site 1933
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ------S--- L A----Q-M-- Site 1932
Kluyveromyces.lactis.IME2 ------E--- F P----Y-V-- Site 1908
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina ------S--- L P----P-R-- Site 1908
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ------N--- R P----K-Y-- Site 1932
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. ------S--- L P----P-M-- Site 1932
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. ------S--- L P----P-M-- Site 1932
Amphimedon.queenslandica.CDK1 ------S--- F P----K-W-- Site 1908
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ------S--- I P----E-P-- Site 1910
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ------S--- F P----R-W-- Site 1908
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME -----SQ--- F T----E-Y-- Site 1932
Neurospora.crassa.IME2 ------S--- F P----K-M-- Site 1908
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ------A--- L P----S-F-- Site 1905
Dictyostelium.discoideum.DYRK2..Probable.serine.th ------Y--- T I----G---- Site 1936
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ------A--- F A----P-R-- Site 1893
Hydra.magnipapillata.CDK1 ------D--- F P----K-W-- Site 1908
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ------T--- L R----K-Q-- Site 1932
Ashbya.gossypii.IME2 ------K--- F P----Y-V-- Site 1908
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ------E--- F P----E-I-- Site 1868
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ------G--- P P----G---- Site 1936
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ------K--- F P----Q-I-- Site 1932
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ------R--- M L----L-R-- Site 1933
Schizosaccharomyces.pombe.b.IME2 ------M--- L P----P-T-- Site 1908
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ------S--- L P----H-K-- Site 1910
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom DIVHVNTVMD L E--------- Site 1995
Schizosaccharomyces.pombe.CDK1 ------T--- F P----R-W-- Site 1908
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ------V--- R E----N---- Site 1932
Saccoglossus.kowalevskii.CDK1 ------S--- F P----K-W-- Site 1908
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---------- - ----------  
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ------N--- R P----K-Y-- Site 1933
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ------S--- F P----K-W-- Site 1908
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ---------Q I P--------- Site 1876
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ------S--- F P----K-W-- Site 1908
Yarrowia.lipolytica.IME2 ------N--- I D----A-Q-- Site 1932
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil -----TK--- F P----K-Y-- Site 1908
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ------S--- F P----K-W-- Site 1932
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K QGFVRALLDK E V--------- Site 1902
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ------K--- F P----Q-I-- Site 1932
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ------R--- F P----Q-I-- Site 1932
Species Residue at Site 3000
in 'msaprobs'
muscle

The residue for every species at site 3000 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ------K--- A P----G---- Site 1936
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo ------R--- G P----H-K-- Site 1932
Scheffersomyces.stipitis.SKY1 ------K--- P W--------- Site 1908
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ------P--- Y P----M-Y-- Site 1932

Generated by PhyloBot at 09:38, November 24th 2020
Questions/Comments? help@phylobot.com