cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 2932 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 2932 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 2932 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 2932 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 GGGTWKQA-E K -L--TKD--- Site 1877
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD ------GG-D E -S--RVY--- Site 1877
Danio.rerio.CDK1 ------GV-T S -M--PDY--- Site 1878
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge ------FL-N E --NAKRY--- Site 1877
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d ------AM-T K -L--PDY--- Site 1878
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK ------TM-R R -L--PDY--- Site 1878
Candida.guilliermondii.IME2 VGGYWVEG-Q L -L--AGK--- Site 1877
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ ---------- - ----------  
Chlamydomonas.reinhardtii.LF4 ------KM-K K -R--SAH--- Site 1877
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ------VM-N - ----PNY---  
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 ---------- - ----------  
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 ---------- - ----------  
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho ------DI-K K -M--PEH--- Site 1878
Schizosaccharomyces.octosporus.b.IME2 --HYWPTA-K E -L--AVK--- Site 1877
Candida.albicans.MAPK3..Extracellular.signal.regul ------NI-K S -KRAREY--- Site 1876
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ------NK-Y Q LELDTQ---- Site 1861
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ---------- - ----------  
Suberites.domuncula.JNK..Stress.activated.protein. ------QL-S S --SVRLY--- Site 1877
Homo.sapiens.CLK3..Dual.specificity.protein.kinase ------RT-R K -Q--KYF--- Site 1877
Aedes.aegypti.CDK1 ------GV-T S -L--PDY--- Site 1878
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci ------KT-R K -R--RYF--- Site 1877
Homo.sapiens.CLK2..Dual.specificity.protein.kinase ------KT-R K -Q--KYF--- Site 1877
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ------TA-S R -R--QTF--- Site 1877
Homo.sapiens.HIPK1..Homeodomain.interacting.protei ------AG-T K -T--TRF--- Site 1877
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar ------VF-S T -N--QFF--- Site 1879
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 ------NV-E S -L--PNY--- Site 1878
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ------KK-Y H IDLDPH---- Site 1872
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM ------CI-I N -EKARNY--- Site 1876
Strongylocentrotus.purpuratus.CDK1 ------GV-T S -L--PDY--- Site 1878
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca ---------- - ----------  
Drosophila.melanogaster.CDK1 ------GV-T S -L--PDY--- Site 1878
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 ---------- - ----------  
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. ---------- - ----------  
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH ------GG-A K -S--KDY--- Site 1878
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d ------GV-T A -F--SEF--- Site 1875
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. ------GV-S K -Y--PQY--- Site 1878
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 ------LF-N K -N--PVF--- Site 1878
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ------KL-N D -KAAKSY--- Site 1876
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo ------TA-C E -G--AKA--- Site 1873
Bombus.terrestris.CDK1 ------GV-S Q -L--RDY--- Site 1878
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 ------AG-K Y -S--KEF--- Site 1878
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar ------LF-C K -N--PLF--- Site 1878
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ------KL-Q P --TVRTY--- Site 1877
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d ------DV-I K -L--PYF--- Site 1878
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ------KF-K Q -S---RA--- Site 1877
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ------KL-N - ----GSS---  
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ------KL-N - ----PSH---  
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 ---------- - ----------  
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 ---------- - ----------  
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO ------SA-S K -T--SKF--- Site 1876
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ------NK-Y Q LELDPQ---- Site 1872
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl ------TA-C E -G--AKA--- Site 1873
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 ------VF-S T -N--QYF--- Site 1879
Homo.sapiens.HIPK3..Homeodomain.interacting.protei ------VG-T K -S--TRF--- Site 1877
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ------GY-S E -L--PVV--- Site 1875
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d ------LF-Y S -N--PRF--- Site 1878
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci ------KT-R K -Q--KYF--- Site 1877
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ------GY-S E -L--PAV--- Site 1878
Naegleria.gruberi.LF4 ------KF-R K -H-ASRY--- Site 1877
Saccharomyces.bayanus.IME2 PGGFWDDA-S K -L--VHK--- Site 1877
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ------KK-Y H IDLDPH---- Site 1872
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ------KL-Q S -EDARNY--- Site 1877
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki ------GV-T C -L--PNY--- Site 1878
Dictyostelium.discoideum.DYRK1..Probable.serine.th ------SS-P K -A--KKF--- Site 1877
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos ------QA-P K -A--RKY--- Site 1878
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos ------AS-K R -A--KNF--- Site 1878
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d ------LF-Y S -N--PRF--- Site 1878
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ------DL-G S -----DYSAL Site 1877
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific ---------- - ----------  
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos ------TA-S R -R--QVF--- Site 1875
Aspergillus.nidulans.IME2 GGGEWKDG-S R -L--AQK--- Site 1877
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi ------KE-- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ------YA-C E -G--AKN--- Site 1877
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ------EG-Y Q -L--ASS--- Site 1877
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep ------GV-T S -M--PDY--- Site 1878
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ------KL-Q P --TVRNY--- Site 1877
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ------CM-N - ----PNY---  
Penicillium.marneffei.IME2 GGGEWREG-T K -L--AQK--- Site 1877
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ------RM-P S -HEARNY--- Site 1876
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a ------ELLR V -M--PSF--- Site 1878
Drosophila.melanogaster.MAK ------DG-Y R -L--ASM--- Site 1877
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH ------RS-Q F -L--NDH--- Site 1873
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr ------KG-V F -K--DQH--- Site 1868
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de ------DV-I K -L--PYF--- Site 1878
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ------DI-K H -L--PEW--- Site 1878
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ------GF-S K -L--PLA--- Site 1875
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.CLK1..Dual.specificity.protein.kinase ------KT-R K -R--KYF--- Site 1879
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis ------EV-- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 ---------- - ----------  
Candida.parapsilosis.IME2 VGGCWPQA-A T -L--SHA--- Site 1878
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p ------GL-K N -Y--PEY--- Site 1878
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ------EM-N - ----PNY---  
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ------DK-Y N IELDPR---- Site 1872
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U ------KS-R Y -R--SFK--- Site 1878
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a ------ELLR V -M--PSF--- Site 1878
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d ------GI-L S -N--EEF--- Site 1875
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ------DK-Y N IELDPR---- Site 1872
Yarrowia.lipolytica.SSN3..Serine.threonine.protein ------SL-S K -F--PEY--- Site 1878
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ------KL-E D -MAAKKY--- Site 1876
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos ------QA-P K -A--RKY--- Site 1878
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ------AR-Y H IDLDPR---- Site 1872
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ------AM-N - ----SNY---  
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD ------AM-N - ----PYY---  
Candida.orthopsilosis.IME2 IGGYWPQA-A I -L--SHA--- Site 1876
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot ------GM-S S -L--PDY--- Site 1878
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ------RL-Q T --TVRNY--- Site 1877
Debaryomyces.hansenii.IME2 LGGYWKEA-Q L -L--SSR--- Site 1877
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ------SM-N - ----PNY---  
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin ------NI-H K -Y--PEY--- Site 1878
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE ------GV-A E -Y--PHF--- Site 1878
Caenorhabditis.briggsae.CDK1 ------GV-E S -L--PDY--- Site 1878
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ------DK-Y N IDLDPR---- Site 1872
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de ------EI-T E -L--PDY--- Site 1878
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ------QS-K R -A--KYF--- Site 1878
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ------ND-V A -L--PR---- Site 1876
Monosiga.brevicollis.CDK1 ------GV-T Q -L--KDY--- Site 1878
Saccharomyces.cerevisiae.SKY1 ------NG-K Y -T--RTF--- Site 1878
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ------AI-K S -PRPREY--- Site 1876
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U ------LF-Y K -N--PVF--- Site 1878
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ------EM-N - ----PNY---  
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas ---------- - ----------  
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ------AL-G S -----GCRAS Site 1875
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d ------LF-Y K -N--PVF--- Site 1894
Dictyostelium.discoideum.CDK10..Probable.cyclin.de ------GF-S S -L--PNF--- Site 1878
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d ------LF-Y S -N--PRF--- Site 1878
Ajellomyces.capsulatus.CDK1 ------GV-T S -F--PDF--- Site 1878
Dictystelium.discoideum.MAPK3..Extracellular.signa ------NI-A N -EQARQF--- Site 1877
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ------RD-V A -L--PR---- Site 1876
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ------GF-S Q -L--PLA--- Site 1875
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ------KL-Q P --TVRTY--- Site 1877
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ------KL-K D -KAAKSY--- Site 1876
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ------QT-I S -V--AL---- Site 1878
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri ------SA-C E -G--ARA--- Site 1873
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ------KL-Q P --TVRNY--- Site 1877
Saccharomyces.cerevisiae.CDK1 ------DI-V Y -L--PDF--- Site 1878
Lodderomyces.elongisporus.IME2 FGGFWNEA-K P -L--ASN--- Site 1877
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen ------RM-P S -HEARTY--- Site 1876
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un ------KT-R K -Q--KYF--- Site 1877
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar ------LF-Y S -N--PRF--- Site 1878
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ------SM-N - ----ENY---  
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ------SI-G - ----PSF---  
Homo.sapiens.CLK4..Dual.specificity.protein.kinase ------KT-R K -R--KYF--- Site 1878
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U ------SG-T K -T--TRF--- Site 1877
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d ------VF-S M -N--QYF--- Site 1890
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ------EM-N - ----PNY---  
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 ------GV-E S -L--PDY--- Site 1878
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ------RD-V S -L--PR---- Site 1878
Cryptococcus.neoformans.SSN3..Serine.threonine.pro ------GI-V H -M--PEY--- Site 1878
Salmo.salar.CDK1 ------GV-T S -M--PDY--- Site 1878
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d ------GM-S S -L--PDY--- Site 1878
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d ------EL-T E -L--PDY--- Site 1878
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ---------- - ----------  
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ------EM-N - ----PNY---  
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable ---------- - ----------  
Aspergillus.fumigatus.IME2 GGGEWREG-S R -L--AQK--- Site 1877
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan ------DI-K K -M--PEH--- Site 1878
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha ------SS-R K -Q--KYF--- Site 1877
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ------KL-E D -KAAKSY--- Site 1876
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S ------YA-C E -G--AKN--- Site 1877
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma ------AG-T K -T--TRF--- Site 1877
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina ------CI-I N -MKARNY--- Site 1876
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d ------GV-S S -N--DEF--- Site 1875
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ------GF-S K -L--PLV--- Site 1878
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de ------VF-S T -N--QFF--- Site 1879
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ------RL-Q P --TVRNY--- Site 1877
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ------RM-D E -NEAAKY--- Site 1877
Candida.glabrata.IME2 HGGLWELS-K A -Y--AAK--- Site 1877
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ------EG-Y Q -L--ASS--- Site 1876
Schizosaccharomyces.pombe.IME2 GGGIWDRA-E L -L--ANK--- Site 1877
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ------NI-K S -KRAREY--- Site 1876
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl ------GV-T H -L--SDY--- Site 1878
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom ------AA-R K -A--HHF--- Site 1877
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. ---------- - ----------  
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d ------GV-T S -I--SEF--- Site 1875
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d ------IF-R S -N--QFF--- Site 1879
Branchiostoma.floridae.CDK1 ------GV-S Q -L--PDY--- Site 1878
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara ------KT-R K -Q--KYF--- Site 1877
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ------TM-N - ----PNY---  
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD ------SL-R L -R--PEF--- Site 1877
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ------SM-N - ----PNY---  
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ---------- - ----------  
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ------EG-Y Q -L--SSA--- Site 1877
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci ------RT-R K -Q--KYF--- Site 1877
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos ------QA-P K -A--RKF--- Site 1877
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep ------GV-T S -M--PDY--- Site 1878
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act ------AV-G A -ERVRAY--- Site 1876
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. ------KI-S S -ESARNY--- Site 1876
Lachancea.thermotolerans.SKY1 ------TG-R H -A--RTF--- Site 1878
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a ------ELLS V -I--PVY--- Site 1878
Dictyostelium.discoideum.CDK1 ------GV-T K -L--PEY--- Site 1878
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ------KL-Q S -AEAKNY--- Site 1876
Xenopus.tropicalis.IME2 ------GV-T T -M--PDY--- Site 1878
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U ------AG-T K -T--SRF--- Site 1877
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ------DK-Y N IELDPR---- Site 1872
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d ------GV-T T -M--PDY--- Site 1878
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara ------GV-S Q -L--PDY--- Site 1878
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. ------GV-S K -L--PNY--- Site 1878
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ------AI-K S -----PFAGT Site 1877
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos ------QA-P K -A--RKF--- Site 1878
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ------EM-N - ----PNY---  
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ------DM-N - ----PHY---  
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ------GY-S D -L--PLV--- Site 1873
Encephalitozoon.cuniculi.CDK1 ------NV-E N -F--PNY--- Site 1878
Saccharomyces.kluyveri.IME2 HGGIWQNA-P S -L--AAR--- Site 1877
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci ------KT-R K -R--KYF--- Site 1877
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a ------CI-I N -LKARNY--- Site 1876
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. ------GV-S K -L--PNY--- Site 1878
Cryptococcus.neoformans.IME2 ------SG-I K -L--AKN--- Site 1877
Homo.sapiens.HIPK4..Homeodomain.interacting.protei ------AA-C K -A--HHF--- Site 1877
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote ------AG-K Y -S--KEF--- Site 1877
Candida.lusitaniae.IME2 -GGKWLEA-I E -L--SQN--- Site 1877
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom ------AG-T K -T--TRF--- Site 1877
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A ------DI-R K -M--PEH--- Site 1878
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep ------EI-T E -L--PDY--- Site 1878
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. ------VF-S S -N--LFF--- Site 1879
Gallus.gallus.CDK2 ------GV-T A -L--PDY--- Site 1878
Emericella.nidulans.CDK1 ------GV-T S -F--PDF--- Site 1878
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ------KF-K Q -S---RA--- Site 1876
Homo.sapiens.CDK1 ------EV-E S -L--QDY--- Site 1878
Candida.albicans.CDK1 ------DV-N Y -L--PDF--- Site 1878
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ------DK-Y N IELDPR---- Site 1872
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a ------AV-G A -ERVRAY--- Site 1876
Mus.musculus.ICK..Serine.threonine.protein.kinase. ------EG-Y Q -L--SSA--- Site 1876
Saccharomyces.castelli.IME2 YGGTWNHV-A E -L--ASK--- Site 1877
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec ------KT-K K -R--RYV--- Site 1877
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep ------DM-C S -L--PDY--- Site 1878
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. ------GV-H S -L--PHF--- Site 1878
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ------SM-N - ----PNY---  
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS ------FE-- - ----------  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli ------GM-S N -L--PDY--- Site 1878
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho ------NV-D N -Y--ELY--- Site 1878
Homo.sapiens.HIPK2..Homeodomain.interacting.protei ------AG-T K -T--TRF--- Site 1877
Acyrthosiphon.pisum.CDK1 ------GV-D Q -L--PDF--- Site 1878
Candida.tropicalis.CDK1 LGGYWNDA-V Y -L--ANK--- Site 1877
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin ------DI-K K -M--PEH--- Site 1878
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ------QM-N - ----SNY---  
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ------DK-Y H IELDPR---- Site 1872
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de ------GI-L S -N--EEF--- Site 1875
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ------NK-Y Q LELDPQ---- Site 1872
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d ------GI-S S -N--EEF--- Site 1875
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA ------KL-E D -KAAKSY--- Site 1876
Candida.albicans.SSN3..Serine.threonine.protein.ki ------NL-N K -Y--PEY--- Site 1878
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF ------KM-K Q -R--SAH--- Site 1877
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ------EM-N - ----PNY---  
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara ------KL-E S -PEAKSY--- Site 1877
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de ------NW-E K -L--PGC--- Site 1878
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ------DK-Y N IELDPR---- Site 1872
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U ------AG-T K -T--SRF--- Site 1877
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ------GY-N D -L--PAV--- Site 1875
Candida.dubliniensis.IME2 LGGYWTEA-L F -L--TNK--- Site 1877
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ------KL-Q P --TVRNY--- Site 1877
Aspergillus.niger.IME2 GGGEWREG-S R -L--AQK--- Site 1877
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge ------KI-S S -EAARNY--- Site 1876
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d ------IF-S K -S--PIF--- Site 1878
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. ------GV-H S -L--PHF--- Site 1878
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ------DK-Y N IELDPR---- Site 1872
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty ------IG-P K -T--HKY--- Site 1877
Schizosaccharomyces.japonicus.IME2 GGGPWPEA-Y E -L--AKD--- Site 1877
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ------RL-Q P --TVRNY--- Site 1877
Gallus.gallus.CDK1 ------DV-E S -L--QDY--- Site 1878
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep ------SM-T K -L--PDY--- Site 1878
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ------TM-N - ----PNY---  
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ------KQ-S V -L--TK---- Site 1877
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ------SM-N - ----PNY---  
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ------RL-Q S -DEAKNY--- Site 1876
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ------GK-Y G LHLPSE---- Site 1872
Kluyveromyces.waltii.IME2 HGGSWEKA-E V -L--ASR--- Site 1876
Debaryomyces.hansenii.SKY1 ------EG-Y Y -T--RDF--- Site 1878
Saccharomyces.cerevisiae.IME2 PGGFWDDA-S N -L--VHK--- Site 1876
Schizosaccharomyces.japonicus.b.IME2 --HEWQMA-G M -L--ASK--- Site 1877
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ------HD-V A -V--PR---- Site 1878
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ------KK-Y H IELDPH---- Site 1872
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a ------ELLS V -I--PVY--- Site 1878
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ------RD-V A -L--PR---- Site 1876
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST ------GM-N - ----PNY---  
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ------KL-Q S -TDAKNY--- Site 1876
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de ------IF-S K -S--PIF--- Site 1875
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ------KL-N Q --SVRTY--- Site 1877
Candida.albicans.IME2 LGGYWTEA-L F -L--TNK--- Site 1876
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ------VD-V T -L--PR---- Site 1878
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ------AF-F K -L--PLA--- Site 1878
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ------KI-S S -ESARNY--- Site 1876
Kluyveromyces.lactis.IME2 FGGSWLDS-K P -L--YQA--- Site 1877
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina ------AV-G A -ERVRAY--- Site 1876
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ------KL-Q P --TVRNY--- Site 1877
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. ------KI-S S -EHARTY--- Site 1876
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 ---------- - ----------  
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. ------KI-S S -EHARTY--- Site 1876
Amphimedon.queenslandica.CDK1 ------GI-S S -F--PDY--- Site 1878
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d ------IF-K S -N--GFF--- Site 1890
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U ------GV-T Q -L--PDY--- Site 1878
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME ------GY-T E -L--PAV--- Site 1875
Neurospora.crassa.IME2 GGGEWREG-T R -L--AGK--- Site 1877
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME ------GV-S H -L--SDY--- Site 1878
Dictyostelium.discoideum.DYRK2..Probable.serine.th ------NS-T R -K--DIF--- Site 1877
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ------RE-V S -L--PR---- Site 1876
Hydra.magnipapillata.CDK1 ------GV-T D -L--KEF--- Site 1878
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ------GF-S K -L--PLV--- Site 1878
Ashbya.gossypii.IME2 HGGAWLQA-E H -L--ASR--- Site 1877
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ---------- - ----------  
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ------QS-K R -A--KYF--- Site 1878
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ------SM-N - ----PNY---  
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ------AI-R S -----EYGAS Site 1877
Schizosaccharomyces.pombe.b.IME2 --HYWSQA-K E -L--AKR--- Site 1877
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a ------CI-I N -LKARNY--- Site 1876
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom ------VG-T K -S--TRF--- Site 1877
Schizosaccharomyces.pombe.CDK1 ------GV-T L -L--QDY--- Site 1878
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch ------KT-R K -Q--KYF--- Site 1877
Saccoglossus.kowalevskii.CDK1 ------GV-N K -L--PDF--- Site 1878
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas ---------- - ----------  
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ------KL-Q P --TVRTY--- Site 1877
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep ------GV-S Q -M--PDY--- Site 1878
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ---------- - ----------  
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep ------GV-T Q -L--PDY--- Site 1878
Yarrowia.lipolytica.IME2 --GRWSRH-P E -L--CSK--- Site 1877
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil ------YL-E K -Y--PEY--- Site 1878
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli ------GV-T S -M--PDY--- Site 1878
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K ------KF-- - ----------  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ------TM-N - ----PNY---  
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ------TM-N - ----PNY---  
Species Residue at Site 2932
in 'msaprobs'
muscle

The residue for every species at site 2932 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro ------IG-P K -T--HKY--- Site 1878
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo ------TA-C E -G--AKA--- Site 1873
Scheffersomyces.stipitis.SKY1 ------EG-Y Y -T--RDF--- Site 1878
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep ------AM-T K -L--PDY--- Site 1878

Generated by PhyloBot at 16:04, October 23rd 2019
Questions/Comments? help@phylobot.com