cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 2311 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 2311 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 2311 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 2311 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 YKVKIADFGL A REI----N-S Site 1453
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD PRAQLVDLGN A CWT----D-- Site 1453
Danio.rerio.CDK1 GEIKLADFGL A RAF----G-V Site 1453
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge CDLKICDFGL A RVT----S-E Site 1453
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d GELKLADFGL A RAF----G-I Site 1453
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK GVLKLADFGL A RAV----G-L Site 1453
Candida.guilliermondii.IME2 YMVKLADYGL A RHV----E-N Site 1453
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ NQVYIIDYGL A KKY----R-D Site 1453
Chlamydomonas.reinhardtii.LF4 DCLKLADFGS C RGI----Y-S Site 1453
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g GILKLCDFGS A KVL----V-P Site 1453
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 NKLFLIDFGL A KKF----R-D Site 1453
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 NKVHLIDFGM A KQY----R-D Site 1453
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho GRVKIADMGF A RLF----N-S Site 1453
Schizosaccharomyces.octosporus.b.IME2 YSVKIADFGL A RSS----T-S Site 1453
Candida.albicans.MAPK3..Extracellular.signal.regul CDLKICDFGL A RSI----A-S Site 1453
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. RKLRLIDWGL A EFY----H-P Site 1453
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 ETIYLIDFGL S KRY----R-D Site 1453
Suberites.domuncula.JNK..Stress.activated.protein. CSLKILDFGL A RTA----D-Q Site 1453
Homo.sapiens.CLK3..Dual.specificity.protein.kinase TSIRVADFGS A TFD----H-- Site 1453
Aedes.aegypti.CDK1 GLIKVADFGL G RSF----N-I Site 1453
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci PDIKVVDFGS A TYD----D-- Site 1453
Homo.sapiens.CLK2..Dual.specificity.protein.kinase TAVRVVDFGS A TFD----H-- Site 1453
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos ASVKVIDFGS S CYE----H-- Site 1453
Homo.sapiens.HIPK1..Homeodomain.interacting.protei YRVKVIDFGS A SHV----S-K Site 1453
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar SVIKLCDFGF A RML----T-G Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 GNLKLADFGL A RLA----S-I Site 1453
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. KKLRLIDWGL A EFY----H-P Site 1453
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM CDLKICDFGL A RIA----D-P Site 1453
Strongylocentrotus.purpuratus.CDK1 GRIKLADFGL A RAF----G-V Site 1453
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca NQVYVIDFGL A KRY----R-D Site 1453
Drosophila.melanogaster.CDK1 GLIKVADFGL G RSF----G-I Site 1453
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 HIIYIIDFGL A KRY----K-D Site 1453
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. HVVNLIDFGL A KRY----R-D Site 1453
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH MRCKVVDFGN A CWA----D-- Site 1453
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d GELKLADFGL A RAK----S-V Site 1453
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. GELKLADFGL A RAK----S-I Site 1453
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET CTLKILDFGL A RTA----G-T Site 1453
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 GVVKLCDFGF A RTL----A-A Site 1453
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U CTLKILDFGL A RTA----G-T Site 1453
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. CELKILDFGL A RHA----D-A Site 1453
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo CVLKICDFGL A RVE----E-L Site 1453
Bombus.terrestris.CDK1 GHIKLADFGL A RTF----G-V Site 1453
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 LKVKIADLGN A CWV----H-- Site 1453
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar GVVKLCDFGF A RTL----A-A Site 1453
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. CTLKILDFGL A RTA----G-T Site 1453
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d GQIKLADFGL A RLY----N-S Site 1453
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. DVLKLGDFGS C RSV----Y-S Site 1453
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. GELKLCDFGS A KRL----A-A Site 1453
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G GTLKLCDFGS A KKL----S-P Site 1453
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 NKLFLIDFGL A KKF----R-D Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 NQVYIIDFGL A KKY----R-D Site 1453
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO YRVKVIDFGS A SHV----S-K Site 1453
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C RKLRLIDWGL A EFY----H-P Site 1453
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl CVLKICDFGL A RVE----E-L Site 1453
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 SVIKLCDFGF A RLL----A-G Site 1453
Homo.sapiens.HIPK3..Homeodomain.interacting.protei YRVKVIDFGS A SHV----S-K Site 1453
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O GILKVGDFGL A REY----G-S Site 1453
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d DILKLCDFGF A RNL----S-E Site 1453
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci TAVRVVDFGS A TFD----H-- Site 1453
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O GILKVGDFGL A REY----G-S Site 1453
Naegleria.gruberi.LF4 PTLKLADFGS C QGT----K-G Site 1453
Saccharomyces.bayanus.IME2 YVIKLADFGL A RHV----E-N Site 1453
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. KKLRLIDWGL A EFY----H-P Site 1453
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a CELKILDFGL A RQT----D-S Site 1453
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki GDLKLADFGL A RQY----G-S Site 1453
Dictyostelium.discoideum.DYRK1..Probable.serine.th SAIKIIDFGS S CHS----N-- Site 1453
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos SAIKIVDFGS S CQL----G-- Site 1453
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos SGIKVIDFGS S CYE----H-- Site 1453
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d DVLKLCDFGF A RNL----S-E Site 1453
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a CRVKLCDFGL A RSL----G-D Site 1453
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific GSLKLIDFGI A NQI----Q-P Site 1453
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos VTVKVIDFGS S CYE----H-- Site 1453
Aspergillus.nidulans.IME2 YTVKIADFGL A RET----H-S Site 1453
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi KKYALVDFGL A QGT----R-D Site 1453
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se CILKICDFGL A RTW----D-Q Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. ELVKIADFGL A REL----R-S Site 1453
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep GAIKLADFGL A RAF----G-V Site 1453
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. CTLKILDFGL A RTA----G-T Site 1453
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. HQVKLCDFGS A KVL----V-K Site 1453
Penicillium.marneffei.IME2 YTVKIADFGL A RET----H-S Site 1453
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen CELKILDFGL A RLT----D-D Site 1453
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a LVLKIGDFGL A RIV----D-Q Site 1453
Drosophila.melanogaster.MAK DLIKIADFGL A REI----R-S Site 1453
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH NILKICDLGS A SDA----S-E Site 1453
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr TILKLCDFGS A SHV----A-D Site 1453
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de GQIKLADFGL A RLY----N-S Site 1453
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep GTVKIGDFGL A RIF----Q-S Site 1453
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d GCVKTADFGL A RAY----G-V Site 1453
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin CTLKILDFGL A RTA----G-T Site 1453
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a CTLKILDFGL A RTA----C-T Site 1453
Homo.sapiens.CLK1..Dual.specificity.protein.kinase PDIKVVDFGS A TYD----D-- Site 1453
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis KKYALVDFGL A QGT----H-D Site 1453
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 NKLFLIDFGL A KKF----R-D Site 1453
Candida.parapsilosis.IME2 FIIKLGDYGL A RHV----N-T Site 1453
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p GKVKIGDLGL G RLI----R-D Site 1453
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen AVLKLCDFGS A KQL----V-R Site 1453
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. CTLKILDFGL A RTA----C-T Site 1453
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki RKLRLIDWGL A EFY----H-P Site 1453
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U TDIKVVDFGS A TFD----D-- Site 1453
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a LVLKIGDFGL A RIV----D-Q Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d GELKLADFGL A RAK----S-I Site 1453
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. RKLRLIDWGL A EFY----H-P Site 1453
Yarrowia.lipolytica.SSN3..Serine.threonine.protein GVLKIGDLGL A RLF----S-N Site 1453
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. CELKILDFGL A RHA----D-A Site 1453
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos SAIKIVDFGS S CQL----G-- Site 1453
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE RELRLIDWGL A EFY----H-P Site 1453
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH QQLKLCDFGS A KAL----V-R Site 1453
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD STLKLCDFGS A KIL----I-K Site 1453
Candida.orthopsilosis.IME2 FLIKLGDYGL A RHV----N-T Site 1453
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot GVLKLADFGL A KAF----G-S Site 1453
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str CTLKILDFGL A RTA----V-E Site 1453
Debaryomyces.hansenii.IME2 YVLKLADYGL A RHI----G-N Site 1453
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati HQLKLCDFGS A KVL----I-K Site 1453
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin GCVKIGDLGL A RKF----Y-N Site 1453
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE GIVKIADFGL A RNF----S-F Site 1453
Caenorhabditis.briggsae.CDK1 GAIKLADFGL A RAI----G-I Site 1453
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO RKLRLIDWGL A EFY----H-P Site 1453
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de GQLKIADFGL A RVF----S-P Site 1453
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos SATKVIDFGS S CFE----Y-- Site 1453
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. GQIKLADFGL A RIY----S-F Site 1453
Monosiga.brevicollis.CDK1 GIIKLADFGL A RAF----G-I Site 1453
Saccharomyces.cerevisiae.SKY1 IQIKIADLGN A CWY----D-- Site 1453
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP CDLKVCDFGL A RSV----A-K Site 1453
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U DPCYFCIFLF Q EAS----Q-H Site 1453
Drosophila.melanogaster.GSK3..Protein.kinase.shagg AVLKLCDFGS A KQL----L-H Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas TLIHIIDFGL A KKY----R-D Site 1453
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. CTVKLCDFGL A RSL----G-D Site 1453
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d GVVKLCDFGF A RTL----A-A Site 1453
Dictyostelium.discoideum.CDK10..Probable.cyclin.de GNLKLADFGL A RKF----G-Y Site 1453
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d DVLKLCDFGF A RNL----S-E Site 1453
Ajellomyces.capsulatus.CDK1 GNLKLADFGL A RAF----G-V Site 1453
Dictystelium.discoideum.MAPK3..Extracellular.signa CLLKICDLGL A RVE----D-A Site 1453
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep GQIKLADFGL A RIY----S-F Site 1453
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep GCVKTADFGL A RAY----G-I Site 1453
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac CTLKILDFGL A RTA----G-T Site 1453
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. CELKILDFGL A RHT----D-T Site 1453
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO GHLKIADFGL A KTY----G-S Site 1453
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri CVLKICDFGL A RVE----E-L Site 1453
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha CTLKILDFGL A RTA----G-T Site 1453
Saccharomyces.cerevisiae.CDK1 GNLKLGDFGL A RAF----G-V Site 1453
Lodderomyces.elongisporus.IME2 FIVKLGDYGL A RHI----S-N Site 1453
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen CELKILDFGL A RHT----D-D Site 1453
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un TDIRVVDFGS A TFD----H-- Site 1453
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar DVLKLCDFGF A RNL----S-E Site 1453
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. LLLKICDLGS A KQL----K-P Site 1453
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D CRLKVADFGL A RTL----S-S Site 1453
Homo.sapiens.CLK4..Dual.specificity.protein.kinase TDIKVVDFGS A TYD----D-- Site 1453
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U YRVKVIDFGS A SHV----S-K Site 1453
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d SAIKLCDFGF A RLL----T-G Site 1453
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen AVLKLCDFGS A KQL----V-R Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 GAIKLADFGL A RAI----G-I Site 1453
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep GTVKLADFGL A RIY----S-Y Site 1453
Cryptococcus.neoformans.SSN3..Serine.threonine.pro GVVKIGDLGL A RLW----H-K Site 1453
Salmo.salar.CDK1 GEIKLADFGL A RAF----G-V Site 1453
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d GVLKLADFGL A KSF----G-S Site 1453
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d GQLKIADFGL A RVF----S-P Site 1453
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi GMLKLIDFGI A NQM----Q-P Site 1453
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen AVLKLCDFGS A KQL----V-R Site 1453
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable DHCKLQDLSS N VLM----T-D Site 1453
Aspergillus.fumigatus.IME2 YTVKIADFGL A RET----H-S Site 1453
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan GRVKIADMGF A RLS----N-S Site 1453
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha TTVRLIDFGT A TFD----Y-- Site 1453
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha CQLKILDFGL A RHA----D-A Site 1453
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S CILKICDFGL A RTW----D-S Site 1453
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma YRVKVIDFGS A SHV----S-K Site 1453
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina CDLKICDFGL A RIA----D-P Site 1453
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d GELKLADFGL A RAK----S-V Site 1453
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. GCVKTADFGL A RAY----G-V Site 1453
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de QVIKLCDFGF A RIL----T-G Site 1453
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S CTLKILDFGL A RTA----G-T Site 1453
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. CELKILDFGL A RHA----D-Q Site 1453
Candida.glabrata.IME2 YVVKLADFGL A RHV----E-N Site 1453
Homo.sapiens.MAK..Serine.threonine.protein.kinase. ELVKIADFGL A REL----R-S Site 1453
Schizosaccharomyces.pombe.IME2 FNVKIADFGL A REI----N-S Site 1453
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P CDLKVCDFGL A RSI----A-S Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl GELKLADFGL A RAF----G-I Site 1453
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom FRVKVIDFGS A SIF----S-E Site 1453
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. NQLFLIDFGL A KKY----R-D Site 1453
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d GELKLADFGL A RAK----S-V Site 1453
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d GMIKICDFGF A RIL----I-P Site 1453
Branchiostoma.floridae.CDK1 GNIKLADFGL A RAF----G-V Site 1453
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara TAIRVVDFGS A TFD----H-- Site 1453
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH GILKLCDFGS A KIL----V-A Site 1453
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD GVAKLCDFGF A RPN----SII Site 1453
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR GILKLCDFGS A KYL----V-R Site 1453
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. GCVKIADFGL A RTY----G-M Site 1453
Homo.sapiens.ICK..Serine.threonine.protein.kinase. ELVKIADFGL A REI----R-S Site 1453
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci TSIRVADFGS A TFD----H-- Site 1453
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos SAIKIVDFGS S CQL----G-- Site 1453
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep GSIKLADFGL A RAF----G-V Site 1453
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act CELKIGDFGM A RGL----C-T Site 1453
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. CELKILDFGL A RHT----D-D Site 1453
Lachancea.thermotolerans.SKY1 IQIKIADLGN A CWY----D-- Site 1453
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a LVLKIGDFGL A RIM----D-P Site 1453
Dictyostelium.discoideum.CDK1 GALKLADFGL A RAV----S-I Site 1453
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. CELKILDFGL A RQA----D-S Site 1453
Xenopus.tropicalis.IME2 GAIKLADFGL A RAF----G-V Site 1453
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U YRVKVIDFGS A SHV----S-K Site 1453
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. RKLRLIDWGL A EFY----H-P Site 1453
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d GAIKLADFGL A RAF----G-V Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara GAIKLADFGL A RAF----G-V Site 1453
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. GELKLADFGL A RAK----S-I Site 1453
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD CLVKVADFGL A RSI----T-S Site 1453
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos SAIKIVDFGS S CQL----G-- Site 1453
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen AVLKLCDFGS A KQL----V-R Site 1453
Drosophila.melanogaster.GSK3H..Putative.glycogen.s GVLKLCDFGS A KQL----I-S Site 1453
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD GVLKIADFGL A RSF----G-T Site 1453
Encephalitozoon.cuniculi.CDK1 ENIKLADFGL G RAA----G-I Site 1453
Saccharomyces.kluyveri.IME2 YVVKIADYGL A RHV----T-N Site 1453
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci TDIKVVDFGS A TYD----D-- Site 1453
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a CDLKICDFGL A RVA----D-P Site 1453
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. GELKLADFGL A RAK----S-I Site 1453
Cryptococcus.neoformans.IME2 VIVKLADFGL A RAT----N-S Site 1453
Homo.sapiens.HIPK4..Homeodomain.interacting.protei FRVKVIDFGS A SIF----S-E Site 1453
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote LQVKIADLGN A CWV----H-- Site 1453
Candida.lusitaniae.IME2 FVLKLCDYGL A KSV----K-N Site 1453
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom YRVKVIDFGS A SHV----S-K Site 1453
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A GRVKIADMGF A RLF----N-A Site 1453
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep GHLKIADFGL A RLF----S-N Site 1453
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. GIIKLCDFGF A TTF----I-G Site 1453
Gallus.gallus.CDK2 GAIKLADFGL A RAF----G-V Site 1453
Emericella.nidulans.CDK1 GNLKLADFGL A RAF----G-V Site 1453
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. DVLKLGDFGS C RSV----Y-S Site 1453
Homo.sapiens.CDK1 GTIKLADFGL A RAF----G-I Site 1453
Candida.albicans.CDK1 GNLKLADFGL A RAF----G-V Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca RKLRLIDWGL A EFY----H-P Site 1453
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a CELKIGDFGM A RGL----C-T Site 1453
Mus.musculus.ICK..Serine.threonine.protein.kinase. ELVKIADFGL A REI----R-S Site 1453
Saccharomyces.castelli.IME2 YVVKLADFGL A RHV----E-N Site 1453
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec PDVKVVDFGN A TYE----H-- Site 1453
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep GVLKLADFGL A KSF----G-S Site 1453
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. GELKLADFGL A RAK----S-V Site 1453
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly HQLKLCDFGS A KIL----V-R Site 1453
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS GRGVLVDFGL A EAQMDYKS-- Site 1453
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli GVLKLADFGL A KAF----G-S Site 1453
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho GVLKLADFGL A RAF----S-L Site 1453
Homo.sapiens.HIPK2..Homeodomain.interacting.protei YRVKVIDFGS A SHV----S-K Site 1453
Acyrthosiphon.pisum.CDK1 GIIKLADFGL A RAF----S-F Site 1453
Candida.tropicalis.CDK1 FIVKLGDYGL A RHV----S-N Site 1453
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin GRVKIADMGF A RLF----N-A Site 1453
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G GVLKLCDFGS A KVL----V-K Site 1453
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR RKLRLIDWGL A EFY----H-P Site 1453
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de GELKLADFGL A RAK----S-I Site 1453
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 RKLRLIDWGL A EFY----H-P Site 1453
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d GELKLADFGL A RAK----S-V Site 1453
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA CQLKILDFGL A RHA----D-A Site 1453
Candida.albicans.SSN3..Serine.threonine.protein.ki GVVKIGDLGL A RKF----K-S Site 1453
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF DCLKLADFGS C RGI----Y-S Site 1453
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA AVLKLCDFGS A KVL----V-R Site 1453
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara CELKILDFGL A RHT----D-A Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de GILKIADFGL A RVI----T-E Site 1453
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei RKLRLIDWGL A EFY----H-P Site 1453
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U YRVKVIDFGS A SYV----S-K Site 1453
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d GILKVGDFGL A REY----G-S Site 1453
Candida.dubliniensis.IME2 FIIKLGDYGL A RHV----S-N Site 1453
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a CTLKILDFGL A RTA----C-T Site 1453
Aspergillus.niger.IME2 YTVKIADFGL A RET----H-S Site 1453
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge CELKILDFGL A RHT----D-E Site 1453
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d GITKLCDFGF A RTL----A-A Site 1453
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. GELKLADFGL A RAK----S-V Site 1453
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein RKLRLIDWGL A EFY----H-P Site 1453
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty SQIRVIDFGS S CQT----G-- Site 1453
Schizosaccharomyces.japonicus.IME2 YVVKIADFGL A REL----R-S Site 1453
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. CTLKILDFGL A RTA----I-E Site 1453
Gallus.gallus.CDK1 GVIKLADFGL A RAF----G-I Site 1453
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep GELKLADFGL A RAF----G-I Site 1453
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P GILKLCDFGS A KIL----V-E Site 1453
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE QTVKLADFGL S KKY----T-N Site 1453
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. GVLKLCDFGS A KYL----V-R Site 1453
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. CELKILDFGL A RQA----D-S Site 1453
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ RKLRLIDWGL A EFY----H-P Site 1453
Kluyveromyces.waltii.IME2 YVVKIADYGL A RHV----T-N Site 1453
Debaryomyces.hansenii.SKY1 ISVKIADLGN A CWT----S-- Site 1453
Saccharomyces.cerevisiae.IME2 YVIKLADFGL A RHV----E-N Site 1453
Schizosaccharomyces.japonicus.b.IME2 YTLKIADFGL A RPL----H-S Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un GQIKLADFGL A RIY----S-F Site 1453
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein KKLRLIDWGL A EFY----H-P Site 1453
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a LVLKIGDFGL A RIM----D-P Site 1453
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep GQIKLADFGL A RIY----S-F Site 1453
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST FSFKICDFGS A KCL----K-P Site 1453
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk CELKILDFGL A RHT----D-S Site 1453
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de GITKLCDFGF A RTL----A-A Site 1453
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act CTLKILDFGL A RTA----A-T Site 1453
Candida.albicans.IME2 FIIKLGDYGL A RHV----S-N Site 1453
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d GQVKLADFGL A RIY----S-C Site 1453
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k GVLKIADFGL A REY----G-S Site 1453
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. CELKILDFGL A RHT----D-D Site 1453
Kluyveromyces.lactis.IME2 YVVKLADYGL A RHV----N-N Site 1453
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina CELKIGDFGM A RGL----C-T Site 1453
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. CTLKILDFGL A RTA----G-T Site 1453
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. CELRILDFGL A RQA----D-E Site 1453
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 NKLFLIDFGL A KKF----R-D Site 1453
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. CELRILDFGL A RQA----D-E Site 1453
Amphimedon.queenslandica.CDK1 GRIKLADFGL A RAF----G-V Site 1453
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d GIIKICDFGF A QIL----I-P Site 1453
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U GAIKLADFGL A RAF----G-V Site 1453
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME GILKVGDFGL A REY----G-S Site 1453
Neurospora.crassa.IME2 YTVKIADFGL A RET----H-S Site 1453
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME GELKLADFGL A RAF----G-I Site 1453
Dictyostelium.discoideum.DYRK2..Probable.serine.th SGIKLIDFGS S CFE----N-- Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep GTVKLADFGL A RIY----S-Y Site 1453
Hydra.magnipapillata.CDK1 GKIKLADFGL A RAF----G-L Site 1453
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar GCVKIADFGL A RTY----G-M Site 1453
Ashbya.gossypii.IME2 YVVKIADYGL A RHV----T-N Site 1453
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi GMLKLIDFGI A NQM----Q-P Site 1453
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos SSTKVIDFGS S CFE----Y-- Site 1453
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p WSLKLCDFGS A KQL----K-P Site 1453
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace CFVKLCDFGL A RSL----Y-Q Site 1453
Schizosaccharomyces.pombe.b.IME2 YSIKLGDFGL A RPS----V-S Site 1453
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a CDLKICDFGL A RVA----D-P Site 1453
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom YRVKVIDFGS A SHV----S-K Site 1453
Schizosaccharomyces.pombe.CDK1 GNLKLADFGL A RSF----G-V Site 1453
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch TSVRVVDFGS A TFD----H-- Site 1453
Saccoglossus.kowalevskii.CDK1 GAIKLADFGL A RAF----G-V Site 1453
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas NLVYIIDFGL A KKY----R-D Site 1453
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac CTLKILDFGL A RTA----G-T Site 1453
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep GAIKLADFGL A RAF----G-V Site 1453
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable GYCKLQDMSS Q ALM----T-H Site 1453
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep GAIKLADFGL A RAF----G-V Site 1453
Yarrowia.lipolytica.IME2 FRIKIADFGL S RHI----E-D Site 1453
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil GCVKIGDLGL A RKF----H-N Site 1453
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli GEIKLADFGL A RAF----G-V Site 1453
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K GRGVLVDFGL A EEN----E-- Site 1453
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly GVLKLCDFGS A KIL----V-E Site 1453
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk GILKLCDFGS A KIL----V-A Site 1453
Species Residue at Site 2311
in 'msaprobs'
muscle

The residue for every species at site 2311 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro SQIRVIDFGS S CQT----G-- Site 1453
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo CVLKICDFGL A RVE----E-L Site 1453
Scheffersomyces.stipitis.SKY1 ISVKIADLGN A CWT----N-- Site 1453
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep GELKLADFGL A RAF----G-I Site 1453

Generated by PhyloBot at 15:47, October 23rd 2019
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