cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1868 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1868 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1868 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1868 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 FN-LF-QLIN S R-R------- Site 1056
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD NN-LL-DLIK H H-R------- Site 1055
Danio.rerio.CDK1 QD-LK-RFMD S T-S------- Site 1056
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge TD-LH-QIIR S N--------- Site 1057
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d QD-LK-KYFD S C-N------- Site 1056
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK VD-LK-RYFE I K--------- Site 1057
Candida.guilliermondii.IME2 QT-LY-GLMR S R-G------- Site 1060
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ PS-LE-DLFN Y C-S------- Site 1056
Chlamydomonas.reinhardtii.LF4 MN-IY-ELIR G R-R------- Site 1056
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ET-VF-DDMR W Y-T------- Site 1053
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 PS-LE-DLFN F C-T------- Site 1056
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 PS-LE-DLFD W C-G------- Site 1054
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho HD-LW-HIIK F H-R------- Site 1053
Schizosaccharomyces.octosporus.b.IME2 AN-LY-QILK R R-Q------- Site 1056
Candida.albicans.MAPK3..Extracellular.signal.regul TD-LH-RVIR T Q--------- Site 1056
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ST-DF-KVLY - ----------  
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 PS-LE-DLFN F C-H------- Site 1056
Suberites.domuncula.JNK..Stress.activated.protein. AN-LC-RVIG I ---------- Site 1064
Homo.sapiens.CLK3..Dual.specificity.protein.kinase KN-TF-EFLK E N-N------- Site 1056
Aedes.aegypti.CDK1 MD-LK-KYMD T L-P------- Site 1060
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci LS-TY-DFIK E N-S------- Site 1056
Homo.sapiens.CLK2..Dual.specificity.protein.kinase LS-TF-DFLK D N-N------- Site 1056
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos IN-LY-ELMK N N-N------- Site 1056
Homo.sapiens.HIPK1..Homeodomain.interacting.protei QN-LY-DFLK Q N-K------- Site 1056
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar HT-VL-HELD K H-P------- Site 1056
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 MD-LR-QYLD N L-Y------- Site 1058
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. NT-DF-KQLY - ----------  
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM TD-LY-KLLK T Q--------- Site 1056
Strongylocentrotus.purpuratus.CDK1 QD-LK-KYMD V A-P------- Site 1056
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca PS-LE-DLFV Y C-G------- Site 1056
Drosophila.melanogaster.CDK1 MD-LK-KYMD S L-P------- Site 1052
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 PS-LE-ELFE Y C-R------- Site 1057
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. PS-LE-DLFN Y C-G------- Site 1056
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH DS-LL-RLIR Y N-Q------- Site 1056
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d SD-LK-QYLD H C-G------- Site 1056
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. TD-LS-QYLE K H-P------- Site 1056
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET AN-LC-QVIQ M ---------- Site 1064
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 HT-IL-DDLE L F-P------- Site 1056
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U AN-LC-QVIQ M ---------- Site 1064
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. TD-LQ-KIMG M ---------- Site 1064
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo SD-LH-KIIV S P--------- Site 1057
Bombus.terrestris.CDK1 QD-LK-KLLD S V-K------- Site 1056
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 HH-LL-KWII K S-N------- Site 1056
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar HT-VL-DDLE A F-P------- Site 1056
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. AN-LC-QVIQ M ---------- Site 1064
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d HD-LM-GLLE S G-L------- Site 1056
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. MN-IY-ELIR G R-R------- Site 1057
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ET-LH-RTCR N Y-Y------- Site 1058
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G DT-LH-RCCR N Y-Y------- Site 1057
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 PS-LE-DLFN F C-T------- Site 1057
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 PS-LE-DLFN F C-S------- Site 1056
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO QN-LY-DFLK Q N-K------- Site 1056
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ST-DF-KVLY - ----------  
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl SD-LH-KIIV S P--------- Site 1057
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 HT-VL-HELD R Y-Q------- Site 1056
Homo.sapiens.HIPK3..Homeodomain.interacting.protei QN-LY-DFLK Q N-K------- Site 1056
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O HD-LK-SLME T M-K------- Site 1057
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d KN-ML-ELLE E L-P------- Site 1056
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci LS-TF-DFLK D N-N------- Site 1056
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O HD-LK-SLME T M-K------- Site 1057
Naegleria.gruberi.LF4 MN-IY-ELIK R R-K------- Site 1056
Saccharomyces.bayanus.IME2 QN-LY-QMMK H R-R------- Site 1056
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. NT-DF-KQLY - ----------  
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a TD-LG-KLMK M E--------- Site 1064
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki WD-LQ-EVIE D K-S------- Site 1056
Dictyostelium.discoideum.DYRK1..Probable.serine.th YN-LY-DLLR N T-H------- Site 1054
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos YN-LY-DLLR N T-H------- Site 1056
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos MN-LY-ELIK K N-K------- Site 1056
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d KN-ML-ELLE E M-P------- Site 1056
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a TD-LN-AVIQ K G--------- Site 1057
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific LD-LN-TWLR N R-K------- Site 1057
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos IN-LY-ELMK N N-S------- Site 1056
Aspergillus.nidulans.IME2 GN-LY-QLMK A R-D------- Site 1055
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi HE-SFLDIL- - ----------  
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se SD-LH-KIIV S P--------- Site 1057
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. EN-LY-QLMK D R-N------- Site 1056
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep QD-LK-KFMD A S-A------- Site 1056
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. AN-LC-QVIQ M ---------- Site 1064
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ET-VN-RVIK H Y-N------- Site 1058
Penicillium.marneffei.IME2 GN-LY-QLMK A R-D------- Site 1055
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen AD-LN-NIVK C Q--------- Site 1058
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a TD-LA-RLLE Q G--------- Site 1064
Drosophila.melanogaster.MAK EN-LY-QMIK D R-D------- Site 1056
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH LN-LR-DILK K F-G------- Site 1054
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr MN-LR-EVLK K Y-G------- Site 1052
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de HD-LM-GLLE S G-L------- Site 1056
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep FD-LF-GIIK Y H-R------- Site 1054
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d QD-LA-SLLE N M-P------- Site 1057
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin AN-LC-QVIQ M ---------- Site 1064
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a AN-LC-QVIH M ---------- Site 1064
Homo.sapiens.CLK1..Dual.specificity.protein.kinase LS-TY-DFIK E N-G------- Site 1056
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis HE-SFLDIL- - ----------  
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 PS-LE-DLFN F C-T------- Site 1057
Candida.parapsilosis.IME2 QN-LY-QLIK S R-K------- Site 1055
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p HD-LL-QIIH F H-S------- Site 1056
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ET-VY-RVAR H F-T------- Site 1058
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. AN-LC-QVIH M ---------- Site 1064
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki NT-DF-KQLY - ----------  
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U LS-TY-DFIK E N-S------- Site 1056
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a TD-LA-CLLE Q G--------- Site 1064
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d KD-LK-QYLD D C-G------- Site 1056
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. NT-DF-KQLY - ----------  
Yarrowia.lipolytica.SSN3..Serine.threonine.protein HD-LL-QIIH Y H-S------- Site 1052
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ID-LQ-KIMG H ---------- Site 1064
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos YN-LY-DLLR N T-H------- Site 1056
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE NS-DF-KQLY - ----------  
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ET-VY-SISR H H-Q------- Site 1052
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD DT-VY-RVSR H Y-S------- Site 1056
Candida.orthopsilosis.IME2 QN-LY-QLIK S R-K------- Site 1055
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot TD-LE-VIIK D T-S------- Site 1056
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str AN-LC-QVIQ M ---------- Site 1064
Debaryomyces.hansenii.IME2 QN-LY-QLMR A R-K------- Site 1056
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati DT-VY-RISK H Y-A------- Site 1058
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin HD-LL-QIIH F H-S------- Site 1052
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE QD-LK-NLMD M L-D------- Site 1056
Caenorhabditis.briggsae.CDK1 YD-LK-RYMD T L-S------- Site 1060
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO NT-DF-KQLY - ----------  
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de SD-LA-EVVR H A-Q------- Site 1057
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos ID-LY-ELIK K N-K------- Site 1056
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. QD-LT-TYLD K V-P------- Site 1056
Monosiga.brevicollis.CDK1 MD-LK-KYMD T I-G------- Site 1060
Saccharomyces.cerevisiae.SKY1 EN-LL-ALIK K Y-E------- Site 1056
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP TD-LH-RVIR T Q--------- Site 1063
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U HT-VL-DELE R Y-P------- Site 1058
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ET-VY-KVAR Q Y-A------- Site 1056
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas PS-LE-DLFT L C-N------- Site 1056
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. TD-LN-AVIR K G--------- Site 1064
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d HT-IL-DDLK L F-P------- Site 1056
Dictyostelium.discoideum.CDK10..Probable.cyclin.de HD-VA-SLID N I-N------- Site 1056
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d KN-ML-ELLE E M-P------- Site 1056
Ajellomyces.capsulatus.CDK1 LD-LK-KYME A L-PVSEGGRG Site 1056
Dictystelium.discoideum.MAPK3..Extracellular.signa TD-LH-QIIT S P--------- Site 1057
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep QD-LT-TYLD K V-P------- Site 1056
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep QD-LA-SLLE N M-P------- Site 1057
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac AN-LC-QVIQ M ---------- Site 1064
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. TD-LQ-KIMG M ---------- Site 1064
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO QD-LS-DLID R L-P------- Site 1056
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri TD-LH-KVIV S P--------- Site 1057
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha AN-LC-QVIQ M ---------- Site 1064
Saccharomyces.cerevisiae.CDK1 LD-LK-RYME G I-P------- Site 1060
Lodderomyces.elongisporus.IME2 QN-LY-QLIR S R-K------- Site 1055
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen AD-LN-NIVK C Q--------- Site 1058
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un LS-TF-DFLK E N-N------- Site 1056
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar KN-ML-ELLE E M-P------- Site 1057
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. MS-LY-QRLK E F-I------- Site 1056
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D SD-LH-NVIK R G--------- Site 1056
Homo.sapiens.CLK4..Dual.specificity.protein.kinase LS-TY-DFIK E N-S------- Site 1056
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U QN-LY-DFLK Q N-K------- Site 1056
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d HT-VL-HELD R Y-Q------- Site 1056
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ET-VY-RVAR H F-T------- Site 1058
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 FD-LK-RYMD Q L-G------- Site 1052
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep QD-LR-TYLD K A-P------- Site 1055
Cryptococcus.neoformans.SSN3..Serine.threonine.pro HD-FL-QIIH Y H-S------- Site 1052
Salmo.salar.CDK1 QD-LK-KFMD S S-S------- Site 1056
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d TD-LE-VIIK D T-S------- Site 1056
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d SD-LA-EVVR H A-Q------- Site 1057
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi ID-LN-SWLK K K-K------- Site 1057
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ET-VY-RVAR H Y-S------- Site 1058
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable LS-FQ-EVIE D K-R------- Site 1058
Aspergillus.fumigatus.IME2 GN-LY-QLMK S R-D------- Site 1055
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan HD-LW-HIIK F H-R------- Site 1053
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha LS-TF-DFLK S N-N------- Site 1056
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha TD-LQ-KIMG H ---------- Site 1064
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S SD-LH-KIIV S P--------- Site 1057
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma QN-LY-DFLK Q N-K------- Site 1056
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina TD-LY-KLLK S Q--------- Site 1056
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d KD-LK-QYMD D C-G------- Site 1056
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. QD-LA-SLLE N M-P------- Site 1057
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de HT-VL-NELD R Y-P------- Site 1056
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S AN-LC-QVIQ M ---------- Site 1064
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. TD-LS-KIMK H G--------- Site 1064
Candida.glabrata.IME2 QN-LY-QMMR R R-K------- Site 1056
Homo.sapiens.MAK..Serine.threonine.protein.kinase. EN-LY-QLMK D R-N------- Site 1056
Schizosaccharomyces.pombe.IME2 CN-LY-QLIS T R-K------- Site 1055
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P TD-LH-RVIR T Q--------- Site 1064
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl QD-LK-KYFD S L-N------- Site 1057
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom QN-LF-EFQK E N-N------- Site 1056
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. PS-LE-DLFN F C-S------- Site 1056
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d SD-LK-QYLD H C-G------- Site 1056
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d HT-LL-NELE R N-P------- Site 1056
Branchiostoma.floridae.CDK1 LD-LK-KYMD S A-P------- Site 1056
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara LS-TF-DFLK D N-N------- Site 1056
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ET-IY-RASR L Y-T------- Site 1056
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD GT-VL-DYIE A QSS------- Site 1055
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ET-VY-RVAR H Y-S------- Site 1058
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. QD-LA-SLLE N M-Q------- Site 1057
Homo.sapiens.ICK..Serine.threonine.protein.kinase. EN-LY-QLIK E R-N------- Site 1056
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci KN-TF-EFLK E N-N------- Site 1056
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos YN-LY-DLLR N T-N------- Site 1056
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep QD-LK-KFMD A S-A------- Site 1056
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act SD-LH-QIIH S S--------- Site 1057
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. AD-LN-NIVK C Q--------- Site 1058
Lachancea.thermotolerans.SKY1 EN-LL-ALIK K Y-E------- Site 1055
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a TD-LA-NVLE Q G--------- Site 1064
Dictyostelium.discoideum.CDK1 QD-LK-KYMD S V--------- Site 1057
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. TD-LG-KLMK H E--------- Site 1064
Xenopus.tropicalis.IME2 QD-LK-KFMD G S-N------- Site 1056
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U QN-LY-DFLK Q N-K------- Site 1056
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. NT-DF-KQLY - ----------  
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d QD-LK-KFMD G S-N------- Site 1056
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara QD-LK-KYID S S-Q------- Site 1056
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. TD-LA-QYMS Q H-P------- Site 1057
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD TD-LH-AVIR A K--------- Site 1064
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos YN-LY-DLLR N T-N------- Site 1057
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ET-VY-RVAR H Y-S------- Site 1058
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ET-LY-KVER Q Y-A------- Site 1056
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD YD-LA-GLLD H M-S------- Site 1056
Encephalitozoon.cuniculi.CDK1 LD-LR-RYLD R M-S------- Site 1058
Saccharomyces.kluyveri.IME2 QN-LY-QLMR Q R-K------- Site 1056
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci LS-TY-DFIK E N-S------- Site 1056
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a TD-LY-KLLK T Q--------- Site 1056
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. TD-LA-QYMS Q H-P------- Site 1057
Cryptococcus.neoformans.IME2 GN-LY-QLTK S R-R------- Site 1056
Homo.sapiens.HIPK4..Homeodomain.interacting.protei QN-LF-EFQK E N-N------- Site 1056
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote HH-LL-KWII K S-N------- Site 1057
Candida.lusitaniae.IME2 QN-LY-QFIQ K H-V------- Site 1054
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom QN-LY-DFLK Q N-K------- Site 1056
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A HD-LW-HIIK F H-R------- Site 1056
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep SD-LS-EVIR N S-Q------- Site 1056
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. HT-VL-NELD R Y-P------- Site 1056
Gallus.gallus.CDK2 QD-LK-KFMD A S-S------- Site 1056
Emericella.nidulans.CDK1 LD-LK-KYME A L-P-VSEGGR Site 1056
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. MN-IY-ELIR G R-R------- Site 1056
Homo.sapiens.CDK1 MD-LK-KYLD S I-P------- Site 1060
Candida.albicans.CDK1 LD-LK-KYME S I-P------- Site 1052
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca NT-DF-KQLY - ----------  
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a SD-LH-QIIH S S--------- Site 1057
Mus.musculus.ICK..Serine.threonine.protein.kinase. EN-LY-QLIK E R-N------- Site 1056
Saccharomyces.castelli.IME2 QN-LY-QMML H R-K------- Site 1056
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec LS-TY-DYLK E N-N------- Site 1056
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep TD-LE-VIIK D N-S------- Site 1056
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. TD-LC-QYMD K H-P------- Site 1056
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly DT-VY-RLSK M Y-S------- Site 1058
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS HE-EFRTFY- - ----------  
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli TD-LE-VIIK D T-S------- Site 1056
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho HD-LA-GLLS N V-L------- Site 1056
Homo.sapiens.HIPK2..Homeodomain.interacting.protei QN-LY-DFLK Q N-K------- Site 1056
Acyrthosiphon.pisum.CDK1 YD-LK-KVLE L R-R------- Site 1056
Candida.tropicalis.CDK1 QN-LY-QLIK S R-R------- Site 1055
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin HD-LW-HIIK F H-R------- Site 1056
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ET-VY-RVIR H H-S------- Site 1056
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR NT-DF-KQLY - ----------  
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de KD-LK-QYLD D C-G------- Site 1056
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ST-DF-KVLY - ----------  
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d KD-LK-QYMD D C-G------- Site 1056
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA TD-LQ-KIMG H ---------- Site 1064
Candida.albicans.SSN3..Serine.threonine.protein.ki HD-LL-QIIH Y Q-S------- Site 1064
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF MN-IY-ELIR G R-R------- Site 1056
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ET-VY-RVAR H Y-S------- Site 1056
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara TD-LS-KVK- G ---------- Site 1051
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de HD-LS-GLLE N P-S------- Site 1054
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei NT-DF-KQLY - ----------  
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U QN-LY-DFLK Q N-K------- Site 1056
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d HD-LK-SLME T M-K------- Site 1056
Candida.dubliniensis.IME2 QN-LY-QLIR S R-R------- Site 1055
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a AN-LC-QVIH M ---------- Site 1064
Aspergillus.niger.IME2 GN-LY-QLMK A R-D------- Site 1055
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge AD-LN-NIVK C Q--------- Site 1058
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d HT-VL-DELQ H Y-C------- Site 1056
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. TD-LC-QYMD K H-P------- Site 1057
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein NT-DF-KQLY - ----------  
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty YN-LY-DLLK N T-N------- Site 1056
Schizosaccharomyces.japonicus.IME2 YN-LL-QLIT K Q-N------- Site 1056
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. AN-LC-QVIQ M ---------- Site 1064
Gallus.gallus.CDK1 MD-LK-KYLD T I-P------- Site 1052
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep QD-LK-KYFD S C-N------- Site 1057
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ET-VY-RASR F F-N------- Site 1053
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE WD-LH-TFLQ N V-P------- Site 1056
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ET-VY-RVAR H Y-S------- Site 1058
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. TD-LG-KLMK H E--------- Site 1064
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ NV-DF-RTLY - ----------  
Kluyveromyces.waltii.IME2 QN-LY-QLMR A R-R------- Site 1055
Debaryomyces.hansenii.SKY1 EN-LL-GLIR R Y-K------- Site 1056
Saccharomyces.cerevisiae.IME2 QN-LY-QMMK H R-R------- Site 1055
Schizosaccharomyces.japonicus.b.IME2 CN-LY-QLMK S R-A------- Site 869
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un QD-LT-TYLD K V-P------- Site 1060
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein NT-DF-KQLY - ----------  
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a TD-LA-NVLE Q G--------- Site 1064
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep QD-LT-TYLD K V-P------- Site 1056
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST QS-LY-QRLR H F-V------- Site 1058
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk TD-LG-KIMK H E--------- Site 1064
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de HT-VL-DELQ H Y-C------- Site 1056
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act AN-LC-QVIQ M ---------- Site 1064
Candida.albicans.IME2 QN-LY-QLIR S R-R------- Site 1055
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d QD-LK-TYLS K V-P------- Site 1056
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k HD-LR-GLME V I-K------- Site 1056
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. AD-LN-NIVK C Q--------- Site 1058
Kluyveromyces.lactis.IME2 QN-IY-QLMK H R-K------- Site 1054
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina SD-LH-QIIH S S--------- Site 1057
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. AN-LC-QVIQ M ---------- Site 1064
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. AD-LN-NIVK C Q--------- Site 1058
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 PS-LE-DLFN F C-T------- Site 1057
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. AD-LN-NIVK C Q--------- Site 1058
Amphimedon.queenslandica.CDK1 YD-LK-KYMD R H-A------- Site 1064
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d HT-LL-NELE R N-P------- Site 1056
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U QD-LK-KYMD S C-Q------- Site 1056
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME HD-LK-SLME T M-K------- Site 1054
Neurospora.crassa.IME2 GN-LY-QLMK A R-D------- Site 1056
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME QD-LK-KYFD S L-N------- Site 1057
Dictyostelium.discoideum.DYRK2..Probable.serine.th MN-LY-DFLK V N-H------- Site 1056
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep QD-LR-TYLD K A-P------- Site 1056
Hydra.magnipapillata.CDK1 QD-LK-KYMD I A-P------- Site 1056
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar QD-LA-SLLE N M-Q------- Site 1057
Ashbya.gossypii.IME2 QN-IY-QLMK C R-K------- Site 1056
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi ID-LN-SWLK K K-K------- Site 1057
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos ID-LY-ELIK K N-K------- Site 1056
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p QS-LY-QRLR H F-V------- Site 1058
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace TD-LH-AVIK K G--------- Site 1064
Schizosaccharomyces.pombe.b.IME2 CN-LF-QLFK R R-Q------- Site 1055
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a TD-LY-KLLK T Q--------- Site 1064
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom QN-LY-DFLK Q N-K------- Site 1056
Schizosaccharomyces.pombe.CDK1 MD-LK-KYMD R I-S------- Site 1056
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch LS-TF-DFLK E N-N------- Site 1056
Saccoglossus.kowalevskii.CDK1 QD-LK-KYMD S S-P------- Site 1056
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas PS-LE-DLFN F C-S------- Site 1057
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac AN-LC-QVIQ M ---------- Site 1064
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep QD-LK-RHMD S S-P------- Site 1056
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable QGTFQ-NIME N K-R------- Site 1059
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep QD-LK-KYMD S T-P------- Site 1060
Yarrowia.lipolytica.IME2 MN-LY-NLMK A Q-E------- Site 1056
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil HD-LL-QIIH F H-S------- Site 1052
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli QD-LK-RFMD S S-T------- Site 1056
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K HE-EFRHFY- - ----------  
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ET-VY-RASR F F-N------- Site 1058
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ET-IY-RASR L Y-T------- Site 1056
Species Residue at Site 1868
in 'msaprobs'
muscle

The residue for every species at site 1868 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro YN-LY-DLLK N T-S------- Site 1056
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo SD-LH-KIIV S P--------- Site 1057
Scheffersomyces.stipitis.SKY1 EN-LL-GLIR R Y-K------- Site 1056
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep QD-LK-KYFD S C-N------- Site 1056

Generated by PhyloBot at 16:29, October 23rd 2019
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