cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1848 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1848 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1848 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1848 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 -------S-F C LHIVMEFLEF Site 1000
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD -----PNG-R H YCMVFELLGN Site 998
Danio.rerio.CDK1 -------E-N K LYLVFEFLHQ Site 998
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge -----EVF-N D VYIAYELMDT Site 998
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d -------D-K K LTLVFEFCDQ Site 998
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK -------D-K K LTLVFEYCSV Site 998
Candida.guilliermondii.IME2 ------SQ-Y C LHFSMECMDQ Site 1000
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ -------G-E Y NVMVIDLLGP Site 999
Chlamydomonas.reinhardtii.LF4 ------PT-G R LALVFELMDM Site 998
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g ----SKDE-T H LCLLLEYMPE Site 998
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 -------K-N F NTLVMDLLGP Site 1000
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 -------G-L H NILVIDLLGP Site 998
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho ------AD-R K VWLLFDYAEH Site 998
Schizosaccharomyces.octosporus.b.IME2 -------N-R N IYLVMECMEA Site 998
Candida.albicans.MAPK3..Extracellular.signal.regul ----YESF-N E IYLIQELMET Site 998
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. ------HS-K T PSLIFEYVNS Site 998
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 -------G-D F NVMAMELLGP Site 999
Suberites.domuncula.JNK..Stress.activated.protein. ----LDDF-Q D VYIVMELMDA Site 998
Homo.sapiens.CLK3..Dual.specificity.protein.kinase -------H-G H MCIAFELLGK Site 998
Aedes.aegypti.CDK1 -------E-N R LYLIFEFLSM Site 998
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci -------R-G H ICIVFELLGL Site 998
Homo.sapiens.CLK2..Dual.specificity.protein.kinase -------H-G H MCISFELLGL Site 998
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos -------R-N H FCITFELLGI Site 998
Homo.sapiens.HIPK1..Homeodomain.interacting.protei -------K-N H TCLVFEMLEQ Site 998
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar -------K-R K LHLVFEYCDH Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 -------I-N K MYLVFEYIDM Site 998
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. ------VS-K T PALVFEYINN Site 998
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM -----DQM-R D VYIVQCLMET Site 998
Strongylocentrotus.purpuratus.CDK1 -------D-K K LYLVFEFMNQ Site 998
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca -------G-D E NILVIDLLGP Site 998
Drosophila.melanogaster.CDK1 -------E-N R IYLIFEFLSM Site 998
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 -------G-D Y NVMVIDLLGP Site 1000
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. -------G-D Y NIMVMDLLGP Site 999
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH -----PNG-Q H LCMVLEFLGD Site 998
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d -------D-R S LTLVFEYLDS Site 998
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. -------K-E T LTFVFEYVHT Site 998
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 -------K-K R WYLVFEFVDH Site 998
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. ----LRNF-Y D FYLVMPFMQT Site 998
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo ----IDYF-E E IYVVTELMQS Site 998
Bombus.terrestris.CDK1 -------D-N H LYLVFEFLQQ Site 998
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 -----VNG-T H ICMVFEVLGH Site 998
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar -------K-K R WYLVFEFVDH Site 998
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. ----LEEF-Q D LYIVMELMDA Site 998
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d --DFKKDK-G A FYLVFEYMDH Site 998
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. ------KS-G S LALICELMDM Site 998
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. ---GRRND-V Y LNVVMEFVPE Site 1000
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G ---RDRRD-I Y LNVVMEYVPD Site 1000
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 -------K-N F NTLVMDLLGP Site 1000
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 -------G-D Y NVLVMDLLGP Site 999
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO -------K-N H TCLVFEMLEQ Site 998
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C ------HS-K T PSLIFEYVNS Site 998
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl ----IDYF-E E IYVVTELMQS Site 998
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 -------K-R R LHLVFEYCDH Site 998
Homo.sapiens.HIPK3..Homeodomain.interacting.protei -------R-N H TCLVFEMLEQ Site 998
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O ------NM-D K IYIVMNYVEH Site 998
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d -------R-G K LYLVFEYVEK Site 998
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci -------H-G H MCISFELLGL Site 998
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O ------NM-D K IYIVMNYVEH Site 998
Naegleria.gruberi.LF4 ------KN-G N LALVFELMDM Site 998
Saccharomyces.bayanus.IME2 ------EN-Y Q LHIVMECMEQ Site 998
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. ------VS-K T PALVFEYINN Site 998
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a ----LDRF-H D FYLVMPFMGT Site 998
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki -------K-S N VYLVFELMQW Site 998
Dictyostelium.discoideum.DYRK1..Probable.serine.th -------R-N H LCIVTELLSY Site 998
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos -------R-N H LCLVFELLSY Site 998
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos -------R-N H ICMTFELLSM Site 998
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d -------R-G K LYLVFEYVEK Site 998
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a ------ND-R D IYLVFESMDT Site 998
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific -------S-S Y IYMLMECGHL Site 998
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos -------R-N H LCITFELLGI Site 998
Aspergillus.nidulans.IME2 ------LT-R K LHIAMEYMDG Site 998
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi -------N-D H VVIAMPYLEH Site 998
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se ----PSFF-Q E LYVLTELMQS Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. -------N-D H LYFVFEYMKE Site 998
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep -------E-N K LYLVFEFLHQ Site 998
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. ----LEEF-Q D VYLVMELMDA Site 998
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. ----EKDE-L Y LNLVLEYVPE Site 1000
Penicillium.marneffei.IME2 ------LS-K K LHICMEYMDG Site 998
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen ----LEGF-N D VYLVTHLMGA Site 998
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a LQGELFKF-S V AYIVQEYMET Site 998
Drosophila.melanogaster.MAK -------N-D T LYFVFEYMKE Site 998
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH -------K-N H LCMVFEMLSL Site 998
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr -------K-Q H LCLVFEPLSM Site 998
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de --DFKKDK-G A FYLVFEYMDH Site 998
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep ------KD-K L LYLIFDYAEF Site 998
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d ------HL-E S IFLVMGYCEQ Site 998
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.CLK1..Dual.specificity.protein.kinase -------H-G H ICIVFELLGL Site 998
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis -------N-D H VVIAMPYLEH Site 998
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 -------K-N F NTLVMDLLGP Site 1000
Candida.parapsilosis.IME2 ------LD-H H LHITMEALNQ Site 998
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p -------D-G T ISMVFEYAEH Site 998
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen ----KKDE-L Y LNLVLEYVPE Site 1000
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki ------VS-R T PALVFEHVNN Site 998
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U -------H-G H VCIVFELLGL Site 998
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a LQGELFKF-S V AYIVQEYMET Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d -------E-K S LTLVFEYLDK Site 998
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. ------VS-R T PALVFEHVNN Site 998
Yarrowia.lipolytica.SSN3..Serine.threonine.protein -------D-T C IYMVFEYAEH Site 998
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. ----FNDF-H N FYLVMPYMQI Site 998
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos -------R-N H LCLVFELLSY Site 998
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE ------IS-R T PALIFEHVNN Site 998
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH ----KQDE-L Y LNLVLEYVPE Site 1000
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD -----NDE-V Y LNLVLEYVPD Site 1000
Candida.orthopsilosis.IME2 ------LD-H Q LHITMEALNQ Site 998
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot -------K-S N ISLVFDYMET Site 998
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str ----VEEF-N D LYIVMELMDA Site 998
Debaryomyces.hansenii.IME2 ------KE-F H LHIVMETMNQ Site 1000
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati ----DKDE-T Y LHLVLEFVPD Site 1000
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin -------R-K S IYMVSEFAEH Site 998
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE -------N-S K LYMVFEFIDQ Site 998
Caenorhabditis.briggsae.CDK1 -------E-N R LYLIFEFLSY Site 998
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO ------VS-R T PALIFEHVNN Site 998
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de -------G-A G FVLAFEFMLS Site 998
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos -------R-N H VCMAFELLSI Site 998
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. ----TDRE-T K LTLVFEHVDQ Site 998
Monosiga.brevicollis.CDK1 -------E-S N LFLVFEFLQM Site 998
Saccharomyces.cerevisiae.SKY1 -----PNG-V H VVMVFEVLGE Site 998
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP ----FSSF-H E VYLIQELMET Site 998
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U -------K-R R LYLVFEFVDH Site 998
Drosophila.melanogaster.GSK3..Protein.kinase.shagg ----KRDE-V F LNLVLEYIPE Site 1000
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas -------G-D F TIMVLDLLGP Site 999
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. ------ND-R D IYLVFEFMDT Site 998
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d -------K-K R WYLVFEFVDH Site 998
Dictyostelium.discoideum.CDK10..Probable.cyclin.de ------TG-D K IYLVFEYLEH Site 998
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d -------R-G K LYLVFEYVEK Site 998
Ajellomyces.capsulatus.CDK1 -------DGH K LYLVFEFLDL Site 998
Dictystelium.discoideum.MAPK3..Extracellular.signa -----EQF-E D VYIVSELMDT Site 998
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep ----TDRE-T K LTLVFEHVDQ Site 998
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep ------HL-E S IFLVMGYCEQ Site 998
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac ----LEEF-Q D VYIVMELMDA Site 998
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. ----LRSF-H D FYLVMPFMQT Site 998
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO ----RDGQ-L L ILLAFEHVEQ Site 1000
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri ----IDCF-E E IYVITELMQT Site 998
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha ----LEEF-Q D VYLVMELMDA Site 998
Saccharomyces.cerevisiae.CDK1 -------DAH K LYLVFEFLDL Site 998
Lodderomyces.elongisporus.IME2 ------LN-H Q LHISMEALNQ Site 998
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen ----LKEF-N D VYLVTHLMGA Site 998
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un -------H-G H MCISFELLGL Site 998
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar -------R-G K LYLVFEYVEK Site 998
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. -----DQE-L Y LNLIVDYMPM Site 1000
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D ------NN-L D FYLVFEFMES Site 998
Homo.sapiens.CLK4..Dual.specificity.protein.kinase -------H-G H VCIVFELLGL Site 998
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U -------K-N H TCLVFEMLEQ Site 998
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d -------K-R R LHLVFEYCDH Site 998
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen ----KKDE-L Y LNLVLEYVPE Site 1000
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 -------E-N R LFLIFEFLSF Site 998
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep ----TDRE-I K VTLVFEHVDQ Site 1000
Cryptococcus.neoformans.SSN3..Serine.threonine.pro -------D-K S IYMVFEYAEH Site 998
Salmo.salar.CDK1 -------E-N K LYLVFEFLHQ Site 998
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d -------K-S N ISLVFDFMET Site 998
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d -------G-G G FVLAFEFMLS Site 998
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi -------D-Q Y IYMVMECGNI Site 998
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen ----KKDE-V Y LNLVLDYVPE Site 1000
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable ----EISS-L Y LCLVMEFNEL Site 1000
Aspergillus.fumigatus.IME2 ------LS-R K LHICMEYMDG Site 998
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan ------AD-R K VWLLFDYAEH Site 998
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha -------N-G H ICISFQLLSL Site 998
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha ----YHGF-Q D FYLVMPYMRT Site 998
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S --LEGRKE-T I TYVLTELMQS Site 1034
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma -------K-N H TCLVFEMLEQ Site 998
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina -----EAM-R D VYIVQDLMET Site 998
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d -------D-K S LTLVFEYLDK Site 998
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. ------HL-E S IFLVMGYCEQ Site 998
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de -------K-R K LHLVFEYCDH Site 998
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S ----LEEF-Q D VYLVMELMDA Site 998
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. ----LDQF-Q D FYLVMPFMGT Site 998
Candida.glabrata.IME2 ------EK-Y Q LHIAMEYMEQ Site 998
Homo.sapiens.MAK..Serine.threonine.protein.kinase. -------N-D H LYFIFEYMKE Site 998
Schizosaccharomyces.pombe.IME2 -------F-R C LHIVMEFLDC Site 998
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P ----YEFF-N E IYLIQELMET Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl -------E-K K LTLVFEHCDQ Site 998
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom -------A-L K FYLVFELLEQ Site 998
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. -------K-D Y NVLVMDLLGP Site 998
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d -------D-R S LTLVFEYLDS Site 998
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d -------K-R K MHLVFEYCDH Site 998
Branchiostoma.floridae.CDK1 -------E-K K LYLVFEYLNL Site 998
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara -------H-G H MCISFELLGL Site 998
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH ----NSDE-V Y LNLVLEFMPE Site 1000
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD -------R-R R LFIIFEYVDG Site 998
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR ----KKDE-L Y LNLILEYVPE Site 1000
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. ------HL-E S IFLVMGYCEQ Site 998
Homo.sapiens.ICK..Serine.threonine.protein.kinase. -------N-D H LYFIFEYMKE Site 998
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci -------H-G H MCIAFELLGK Site 998
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos -------R-N H LCLVFEMLSY Site 998
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep -------E-N K LYLVFEFLHQ Site 998
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act ----YGEF-K S VYVVLDLMES Site 998
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. ----LEEF-N D VYLVTHLMGA Site 998
Lachancea.thermotolerans.SKY1 -----PNG-K H VVMVFEVLGE Site 998
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a DVGSLTEL-N S VYIVQEYMET Site 998
Dictyostelium.discoideum.CDK1 -------Q-N R LYLVFEYLDQ Site 998
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. ----LDDF-T D FYLVMPFMGT Site 998
Xenopus.tropicalis.IME2 -------E-N K LYLVFEFLNQ Site 998
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U -------K-N H TCLVFEMLEQ Site 998
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. ------VS-R T PALVFEHVNN Site 998
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d -------E-N K LYLVFEFLNQ Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara -------Q-K K LYLVFEYLNQ Site 998
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. -------K-E T LTFVFEYMHT Site 998
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD ------ND-R D IYLVFEHMET Site 998
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos -------R-N H LCLVFEMLSY Site 998
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen ----KKDE-V Y LNLVLDYVPE Site 1000
Drosophila.melanogaster.GSK3H..Putative.glycogen.s ----KRDE-V Y LNLVMEFLPE Site 1000
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD ------QL-E S LFLVMGYCQY Site 998
Encephalitozoon.cuniculi.CDK1 -------N-N K MYLVFEYVEL Site 998
Saccharomyces.kluyveri.IME2 ------AQ-Y Q LHIVMECLEQ Site 998
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci -------H-G H VCIVFELLGL Site 998
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a -----EQM-K D VYIVQDLMET Site 998
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. -------K-E T LTFVFEYMHT Site 998
Cryptococcus.neoformans.IME2 ------KS-R E LYFVFECMEG Site 998
Homo.sapiens.HIPK4..Homeodomain.interacting.protei -------A-L K FYLVFELLEQ Site 998
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote -----VNG-T H ICMVFEVLGH Site 998
Candida.lusitaniae.IME2 ------TS-G K LNIVMEPMNQ Site 998
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom -------K-N H TCLVFEMLEQ Site 998
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A ------TD-R K VWLLFDYAEH Site 998
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep -------G-T G FVLVFEYMLS Site 998
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. -------K-R K LHLVFEYCDH Site 998
Gallus.gallus.CDK2 -------E-N K LYLVFEFLHQ Site 998
Emericella.nidulans.CDK1 -------DGH K LYLVFEFLDL Site 998
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. ------KS-G S LALICELMDM Site 998
Homo.sapiens.CDK1 -------D-S R LYLIFEFLSM Site 998
Candida.albicans.CDK1 -------DSH K LYLVFEFLDL Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca ------VS-R T PALVFEHVNN Site 998
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a ----YGEF-R S VYVVLDLMES Site 998
Mus.musculus.ICK..Serine.threonine.protein.kinase. -------N-D H LYFIFEYMKE Site 998
Saccharomyces.castelli.IME2 ------SN-Y Q LHIVMECMEQ Site 998
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec -------H-G H VCISFELLGL Site 998
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep -------K-S N ISLVFDFMET Site 998
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. -------K-E T LTLVFEYVHT Site 998
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly ----EKEE-V Y LNLVLEFVPD Site 1000
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS -------R-D Q VIAVLPYYPH Site 998
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli -------K-S N ISL-LCFMET Site 998
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho --PYNRCK-G S IYLVFDFCEH Site 998
Homo.sapiens.HIPK2..Homeodomain.interacting.protei -------K-N H TCLVFEMLEQ Site 998
Acyrthosiphon.pisum.CDK1 -------D-K K LFLVFEFMDY Site 998
Candida.tropicalis.CDK1 ------VN-Y Q LHISMEALNQ Site 998
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin ------ND-R K VFLLIDYAEH Site 998
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G ----KKDE-L Y LNLVLDFIPE Site 1000
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR ------VS-R T PALIFEHVNN Site 998
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de -------E-K S LTLVFEYLDK Site 998
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 ------HS-K T PSLIFEYVNS Site 998
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d -------D-K S LTLVFEYLDK Site 998
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA ----YHGF-Q D FYLVMPYMRT Site 998
Candida.albicans.SSN3..Serine.threonine.protein.ki -------N-K S IYMVFEFCEH Site 998
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF ------PT-G R LALVFELMDM Site 998
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA ----KKDE-V F LNLVLEYVPE Site 1000
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara ----LDEF-Q D FYLVMPYMYT Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de --KKHRRR-G S IYMVTPYMDH Site 998
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei ------VS-R T PALVFEHVNN Site 998
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U -------R-N H TCLVFEMLEQ Site 998
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d ------NM-D K IYIVMNYVEH Site 998
Candida.dubliniensis.IME2 ------IQ-Y Q LHISMEALNQ Site 998
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a ----LEEF-Q D VYLVMELMDA Site 998
Aspergillus.niger.IME2 ------LS-R K LHICMEYMDG Site 998
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge ----FEEF-N D VYLVTHLMGA Site 998
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d -------K-K K IHLVFEFIDH Site 998
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. -------K-E T LTLVFEYVHT Site 998
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein ------VS-R T PALVFEHVNN Site 998
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty -------R-A H LCLVFELLSY Site 998
Schizosaccharomyces.japonicus.IME2 -------K-K H LHMVMENLQY Site 998
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. ----LDEF-N D LYIVMELMDA Site 998
Gallus.gallus.CDK1 -------D-A R LYLIFEFLSM Site 998
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep -------D-K K LTLVFEFCDQ Site 998
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P ----RKDE-V Y LNLVQEFVPE Site 1000
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE ----SRNI-I K IAMIMEICDW Site 1000
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. ----KKDE-L Y LNLILEYVPE Site 1000
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. ----LDDF-T D FYLVMPFMGT Site 998
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ ------DS-K I PALIFEEIKN Site 998
Kluyveromyces.waltii.IME2 ------VN-Y Q LHIVMECMEQ Site 998
Debaryomyces.hansenii.SKY1 -----PNG-V H VVMVFEVLGE Site 998
Saccharomyces.cerevisiae.IME2 ------EN-Y Q LHIVMECMEQ Site 998
Schizosaccharomyces.japonicus.b.IME2 ---------- - -------MDC  
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un ----TDRE-T K LTLVFEHVDQ Site 998
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein ------VS-K T PALVFEYINN Site 998
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a DVGSLTEL-N S VYIVQEYMET Site 998
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep ----TDRE-T K LTLVFEHVDQ Site 998
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST ----EEDE-V Y LNLVLDYMPQ Site 1000
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk ----LDKF-N D FYLVMPFMGT Site 998
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de -------K-K K IHLVFEFIDH Site 998
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act ----LEEF-Q D VYLVMELMDA Site 998
Candida.albicans.IME2 ------IQ-Y Q LHISMEALNQ Site 998
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d ----TDRE-T K VTLVFEHVDQ Site 998
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k ------NI-N S IFMAMEFIDH Site 998
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. ----LEEF-N D VYLVTHLMGA Site 998
Kluyveromyces.lactis.IME2 ------SL-Y H LHIVMECMEQ Site 998
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina ----YGEF-K S VYVVLDLMES Site 998
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. ----LEEF-Q D VYLVMELMDA Site 998
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. ----IEDF-S E VYLVTTLMGA Site 998
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 -------K-N F NTLVMDLLGP Site 1000
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. ----IEDF-S E VYLVTTLMGA Site 998
Amphimedon.queenslandica.CDK1 -------D-R K LFMVFEFLDY Site 998
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d -------K-R K MHLVFEYCDH Site 998
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U -------Q-K K LYMVFEYLNQ Site 998
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME ------NM-D K IFIVMDYVEH Site 998
Neurospora.crassa.IME2 ------FT-K K LHIAMEYMEG Site 998
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME -------D-K K LTLVFEHCDQ Site 998
Dictyostelium.discoideum.DYRK2..Probable.serine.th -------R-N H LILTFELLSM Site 998
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep ----TDRD-I K VTLVFEHIDQ Site 1000
Hydra.magnipapillata.CDK1 -------Q-A R LFLVFEYLNQ Site 998
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar ------HL-E S IFLVMGYCEQ Site 998
Ashbya.gossypii.IME2 ------SL-Y Q LHIVMECMEQ Site 998
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi -------E-Q Y IYMVMECGNI Site 998
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos -------R-N H VCMAFELLSI Site 998
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ----SQDE-I Y LNLILEYMPQ Site 1000
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace ------ND-K D IYLIFEFMDT Site 998
Schizosaccharomyces.pombe.b.IME2 -------Y-R N IFLVMEFMDC Site 998
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a -----EQM-K D VYIVQDLMET Site 998
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom -------R-N H TCLVFEMLEQ Site 998
Schizosaccharomyces.pombe.CDK1 -------E-S K LYLVFEFLDM Site 998
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch -------H-G H MCLSFELLAL Site 998
Saccoglossus.kowalevskii.CDK1 -------E-K K LYLVFEYLNQ Site 998
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas -------G-D Y NVMVMELLGP Site 1000
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac ----LEEF-Q D VYIVMELMDA Site 998
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep -------E-K K LYMVFEFLTQ Site 998
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable ----EISS-L F LCLVMDYYSQ Site 1000
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep -------E-R K LYLVFEFLSQ Site 998
Yarrowia.lipolytica.IME2 ------VN-H H FHMSMEVMEM Site 998
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil -------R-K C VHMVYEYAEH Site 998
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli -------E-N K LYLVFEFLHQ Site 998
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K -------Q-D Q VVVVLPWYPH Site 998
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly ----RKDE-V Y LNLVQEFVPE Site 1000
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk ----NSDE-V Y LNLVLEFMPE Site 1000
Species Residue at Site 1848
in 'msaprobs'
muscle

The residue for every species at site 1848 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro -------R-A H LCLVFELLSY Site 998
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo ----IDYF-E E IYVVTELMQS Site 998
Scheffersomyces.stipitis.SKY1 -----PNG-V H VVMVFEVLGE Site 998
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep -------D-K K LTLVFEFCDQ Site 998

Generated by PhyloBot at 16:45, October 23rd 2019
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