cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 1778 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1778 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1778 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1778 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.octosporus.IME2 VN---IFDLY I DQ-------- Site 990
Dictyostelium.discoideum.SKY1..sp.Q86A12.SKY1_DICD AR---LLDHF T HRG------- Site 989
Danio.rerio.CDK1 VK---LRDVI H T--------- Site 989
Medicago.sativa.MAPK3..sp.Q07176.MMK1_MEDSA.Mitoge VA---IRDIV P PPQ------- Site 984
Xenopus.laevis.CDK5..sp.P51166.CDK5_XENLA.Cyclin.d VR---LHDVL H S--------- Site 989
Oikopleura.dioica.CDK5..tr.J9JF51.J9JF51_OIKDI.CDK VR---LLDVL H T--------- Site 989
Candida.guilliermondii.IME2 LH---IYEVF I DT-------- Site 989
Zea.mays.CK1a..gi.413939414.gb.AFW73965.1..putativ PH---LKWFG V E--------- Site 990
Chlamydomonas.reinhardtii.LF4 IK---LLEVL Y DQ-------- Site 987
Schizosaccharomyces.pombe.GSK3.1..Protein.kinase.g IK---LIAFF H THN------- Site 983
Drosophila.melanogaster.CK1c...gi.7292798.gb.AAF48 PR---IRHHG K E--------- Site 991
Saccharmomyces.cerevisiae.CK1..gi.433622.emb.CAA42 PQ---EYYFG Q E--------- Site 989
Homo.sapiens.CDK8..Cyclin.dependent.kinase.8.OS.Ho IS---LQKVF L SH-------- Site 987
Schizosaccharomyces.octosporus.b.IME2 ID---LLETF M DP-------- Site 988
Candida.albicans.MAPK3..Extracellular.signal.regul IS---ILAIQ R PIN------- Site 984
Arabidopsis.thaliana.CK2a2..sp.Q08466.CSK22_ARATH. VK---LLDVV R DQ-------- Site 987
Galdieria.suphuraria.CK1..gi.545709990.ref.XP_0057 VGFPTVKWYG Q E--------- Site 990
Suberites.domuncula.JNK..Stress.activated.protein. IG---LKNLF T PAK------- Site 983
Homo.sapiens.CLK3..Dual.specificity.protein.kinase VL---MSDWF N F--------- Site 989
Aedes.aegypti.CDK1 VS---LEDVL M E--------- Site 989
Mus.musculus.CLK1..sp.P22518.CLK1_MOUSE.Dual.speci VQ---MLEWF E H--------- Site 989
Homo.sapiens.CLK2..Dual.specificity.protein.kinase VQ---MFDWF D Y--------- Site 989
Homo.sapiens.DYRK4..Dual.specificity.tyrosine.phos VH---MKDFF Y F--------- Site 989
Homo.sapiens.HIPK1..Homeodomain.interacting.protei VR---SYECF Q H--------- Site 989
Gallus.gallus.CDKL1..tr.E1C5K5.E1C5K5_CHICK.Unchar VN---LLEVF R R--------- Site 989
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Nosema.ceranae.CDK1 VS---LDDVI Y N--------- Site 989
Homo.sapiens.CSK2a2..sp.P19784.CSK22_HUMAN.Casein. IK---LIDTV K DP-------- Site 987
Drosophila.melanogaster.MAPK3..sp.P40417.ERKA_DROM ID---IRDIL R VDS------- Site 984
Strongylocentrotus.purpuratus.CDK1 VK---LHDVV H S--------- Site 989
Zea.mays.CK1b..gi.226502995.ref.NP_001148106.1..ca AN---IKWCG I D--------- Site 989
Drosophila.melanogaster.CDK1 VC---LEDVL M E--------- Site 989
Oxytricha.trifallax.CK..gi.403365855.gb.EJY82718.1 PK---LYYYS Q E--------- Site 989
Dictyostelium.discoideum.CK1..sp.Q556Y4.KC1_DICDI. PA---VKWFG F D--------- Site 990
Arabidopsis.thaliana.SRPK1..tr.Q9FYB4.Q9FYB4_ARATH VR---LIDHF K HSG------- Site 989
Homo.sapiens.CDK18..sp.Q07002.CDK18_HUMAN.Cyclin.d VT---LHDLI H T--------- Site 989
Crassostrea.gigas.PFTAIRE..tr.K1Q2C8.K1Q2C8_CRAGI. VT---LHDII H T--------- Site 989
Tetradon.nigroviridis.MAPK10..tr.H3CCC1.H3CCC1_TET IS---LLNVF T PQK------- Site 983
Homo.sapiens.CDKL2..Cyclin.dependent.kinase.like.2 VN---LLEVC K K--------- Site 989
Takifugu.rubripes.MAPK10..tr.H2U861.H2U861_TAKRU.U IS---LLNVF T PQK------- Site 983
Homo.sapiens.MAPK13..sp.O15264.MK13_HUMAN.Mitogen. IG---LLDVF T PAS------- Site 983
Homo.sapiens.NLK..sp.Q9UBE8.NLK_HUMAN.Serine.threo LS---ALDIL Q PPH------- Site 984
Bombus.terrestris.CDK1 VQ---LFDVV D G--------- Site 989
Homo.sapiens.SRSF.GN.SRPK1.PE.1.SV.2 VQ---LLDDF K ISG------- Site 989
Gallus.gallus.CDKL2..tr.E1C431.E1C431_CHICK.Unchar VS---LLEVY K K--------- Site 989
Xenopus.laevis.MAPK8.sp.Q8QHK8.MK08_XENLA.Mitogen. IG---LLNVF T PQK------- Site 983
Homo.sapiens.CDK12..sp.Q9NYV4.CDK12_HUMAN.Cyclin.d VN---MKEIV T DKQ------- Site 979
Mus.musculus.MOK..MAPK.MAK.MRK.overlapping.kinase. LA---LHEVV F DR-------- Site 985
Trypanosoma.brucei.GSK3..Glycogen.synthase.kinase. VM---LKNYF Y TVG------- Site 983
Leishmania.infantum.GSK3..tr.A4HXQ3.A4HXQ3_LEIIN.G VQ---LQSYF Y TLG------- Site 984
Drosophila.melanogaster.CK1a...gi.22832152.gb.AAN0 PR---IRHHG K E--------- Site 989
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Arabidopsis.thaliana.CK1..gi.332659757.gb.AEE85157 PN---VKWFG V E--------- Site 990
Drosophila.melanogaster.HIPK..tr.M9PDR2.M9PDR2_DRO VR---AFECF Q H--------- Site 989
Arabidopsis.thaliana.CK2a..sp.Q08467.CSK21_ARATH.C VK---LLDVV R DQ-------- Site 987
Xenopus.tropicalis.NLK1..tr.B0JZD9.B0JZD9_XENTR.Nl LS---ALDIL Q PPH------- Site 984
Homo.sapiens.CDKL1..Cyclin.dependent.kinase.like.1 VN---LLEVF R R--------- Site 989
Homo.sapiens.HIPK3..Homeodomain.interacting.protei VR---AYECF Q H--------- Site 989
Homo.sapiens.CDK11A..Cyclin.dependent.kinase.11A.O VT---VREIV V GS-------- Site 987
Danio.rerio.CDKL5..tr.B9X2H6.B9X2H6_DANRE.Cyclin.d VE---LKEAF R R--------- Site 989
Mus.musculus.CLK2..sp.O35491.CLK2_MOUSE.Dual.speci VQ---MFDWF D Y--------- Site 989
Homo.sapiens.CDK11B..Cyclin.dependent.kinase.11B.O VT---VREIV V GS-------- Site 987
Naegleria.gruberi.LF4 IS---LLEVV Y DP-------- Site 987
Saccharomyces.bayanus.IME2 IQ---IFEVF I DS-------- Site 987
Mus.musculus.CSK2a2..sp.O54833.CSK22_MOUSE.Casein. IK---LIDTV K DP-------- Site 987
Danio.rerio.MAPK12..sp.O42376.MK12_DANRE.Mitogen.a IG---LVDVF T ADL------- Site 983
Dictyostelium.discoideum.CDK7..Cyclin.dependent.ki VN---LLDIF A H--------- Site 989
Dictyostelium.discoideum.DYRK1..Probable.serine.th IK---LKHHF K F--------- Site 989
Mus.musculus.DYR1B..Dual.specificity.tyrosine.phos VH---LKRHF M F--------- Site 989
Homo.sapiens.DYRK2..Dual.specificity.tyrosine.phos IH---MLENF T F--------- Site 989
Mus.musculus.CDKL5..sp.Q3UTQ8.CDKL5_MOUSE.Cyclin.d VE---LKEAF R R--------- Site 989
Mus.musculus.MAPK15.sp.Q80Y86.MK15_MOUSE.Mitogen.a IR---LLDVI P AK-------- Site 987
Danio.rerio.TTK..sp.Q8AYG3.TTK_DANRE.Dual.specific IK---LYDYE I T--------- Site 989
Mus.musculus.DYRK4..Dual.specificity.tyrosine.phos VH---MKDFF Y F--------- Site 989
Aspergillus.nidulans.IME2 VP---ALDIF L DP-------- Site 987
Mus.musculus.CDC7...sp.Q9Z0H0.CDC7_MOUSE.Cell.divi MG---LKYCF R K--------- Site 989
Caenorhabditis.elegans.NLK..sp.Q9U9Y8.NLK_CAEEL.Se LS---LLDIL Q PAN------- Site 985
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.MAK..Serine.threonine.protein.kinase. IK---LKEVI R E--------- Site 989
Homo.sapiens.CDK2..sp.P24941.CDK2_HUMAN.Cyclin.dep VK---LLDVI H T--------- Site 989
Xenopus.tropicalis.MAPK10..tr.F7CYE3.F7CYE3_XENTR. IS---LLNVF T PQK------- Site 983
Glycine.max.GSK3..tr.C7AE95.C7AE95_SOYBN.Glycogen. VC---LKHCF F STT------- Site 986
Penicillium.marneffei.IME2 VP---ALDIF L DP-------- Site 987
Danio.rerio.MAPK14b..sp.Q9DGE1.MK14B_DANRE.Mitogen IG---LLDVF S PAT------- Site 983
Homo.sapiens.MAPK4..sp.P31152.MK04_HUMAN.Mitogen.a VK---VYEVL G PKG------- Site 978
Drosophila.melanogaster.MAK VK---LKEVI R E--------- Site 989
Schizosaccharomyces.pombe.PRP4..sp.Q07538.PRP4_SCH IH---YERHF M H--------- Site 989
Mus.muculus.PRP4..sp.Q61136.PRP4B_MOUSE.Serine.thr LR---LFRHF Y H--------- Site 989
Mus.musculus.CDK12.sp.Q14AX6.CDK12_MOUSE.Cyclin.de VN---MKEIV T DKQ------- Site 979
Dictyostelium.discoideum.CDK8..Probable.cyclin.dep VK---LLDVC L NP-------- Site 987
Mus.musculus.CDK10..sp.Q3UMM4.CDK10_MOUSE.Cyclin.d VE---LKEVV V GN-------- Site 987
Homo.sapiens.MAPK10..Mitogen.activated.protein.kin IS---LLNVF T PQK------- Site 983
Homo.sapiens.MAPK9..sp.P45984.MK09_HUMAN.Mitogen.a IS---LLNVF T PQK------- Site 983
Homo.sapiens.CLK1..Dual.specificity.protein.kinase VQ---MLEWF E H--------- Site 989
Homo.sapiens.CDC7..sp.O00311.CDC7_HUMAN.Cell.divis MG---VKYCF R K--------- Site 989
Drosophila.melanogaster.CK1d..gi.272506076.gb.ACZ9 PR---IRHHG K E--------- Site 989
Candida.parapsilosis.IME2 VQ---IFEIF I DD-------- Site 987
Schizosaccharomyces.pombe.SSN3..Serine.threonine.p VS---LVQVL L K--------- Site 989
Homo.sapiens.GSK3a..sp.P49840.GSK3A_HUMAN.Glycogen VR---LRYFF Y SSG------- Site 985
Gallus.gallus.MAPK9..sp.P79996.MK09_CHICK.Mitogen. IS---LLNVF T PQK------- Site 983
Homo.sapiens.CK2a..sp.P68400.CSK21_HUMAN.Casein.ki IT---LADIV K DP-------- Site 987
Taeniopygia.guttata.CLK4..tr.H0YSC9.H0YSC9_TAEGU.U VQ---MLEWF D H--------- Site 989
Mus.musculus.MAPK4..sp.Q6P5G0.MK04_MOUSE.Mitogen.a VK---VYEVL G PKG------- Site 978
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK16..sp.Q04735.CDK16_MOUSE.Cyclin.d VT---LHDII H T--------- Site 989
Homo.sapiens.CSK2a1..sp.P68400.CSK21_HUMAN.Casein. IT---LADIV K DP-------- Site 987
Yarrowia.lipolytica.SSN3..Serine.threonine.protein TK---LVETI L E--------- Site 989
Xenopus.tropicalis.MAPK13..tr.B1WBJ0.B1WBJ0_XENTR. IG---LLDVF T SAT------- Site 983
Homo.sapiens.DYR1B..Dual.specificity.tyrosine.phos VH---LKRHF M F--------- Site 989
Caenorhabditis.elegans.CSK2a..sp.P18334.CSK2A_CAEE IT---LLDVV K DP-------- Site 987
Thalassiosira.pseudonona.GSK3..tr.B8CFP1.B8CFP1_TH VA---LKHCF Y SQG------- Site 985
Dictyostelium.discoideum.GSK3..sp.P51136.GSK3_DICD VS---LKNSF Y TSD------- Site 987
Candida.orthopsilosis.IME2 VQ---IFEIF I DD-------- Site 987
Danio.rerio.CDK7..tr.Q6NWC5.Q6NWC5_DANRE.Cdk7.prot ------LDAF G H--------- Site 989
Ancylostoma.caninum.MAPK8.sp.Q9U6D2.JNK1_ANCCA.Str IG---LLNAF S PQR------- Site 983
Debaryomyces.hansenii.IME2 VQ---IYDMF I DN-------- Site 989
Volvos.carteri.GSK3..tr.D8TP98.D8TP98_VOLCA.Putati VK---LKHCF Y SHT------- Site 986
Ashbya.gossypii.SSN3..Serine.threonine.protein.kin TK---LVEIF L E--------- Site 989
Caenorhabditis.briggsae.CDK2..tr.A8XL31.A8XL31_CAE VT---LFDII Y A--------- Site 989
Caenorhabditis.briggsae.CDK1 VG---LEAVI M Q--------- Site 989
Drosophila.melanogaster.CSK2a..sp.P08181.CSK2A_DRO IT---LLAVV K DP-------- Site 987
Mus.musculus.CDK20.sp.Q9JHU3.CDK20_MOUSE.Cyclin.de VQ---LKAVF P H--------- Site 989
Mus.musculus.DYRK3..Dual.specificity.tyrosine.phos IH---MLESF T F--------- Site 989
Gallus.gallus.CDK6..tr.Q90771.Q90771_CHICK.Cyclin. VR---LFDVC T VSR------- Site 984
Monosiga.brevicollis.CDK1 VS---LQDVV L Q--------- Site 989
Saccharomyces.cerevisiae.SKY1 LK---LLDHF N HKG------- Site 989
Komagataella.pastoris.MAPK3..tr.F2QYY4.F2QYY4_PICP IS---ILDIQ V PYD------- Site 983
Petromyzon.marinus.CDKL3..tr.S4RCQ7.S4RCQ7_PETMA.U VN---LLEVF R R--------- Site 989
Drosophila.melanogaster.GSK3..Protein.kinase.shagg VK---LLYFF Y SSG------- Site 985
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Plasmodium.falciparum.CK1..sp.Q8IHZ9.KC1_PLAF7.Cas PK---VYWYG I E--------- Site 990
Homo.sapiens.MAPK15..sp.Q8TD08.MK15_HUMAN.Mitogen. IS---LLDVI R AE-------- Site 987
Mus.musculus.CDKL2..sp.Q9QUK0.CDKL2_MOUSE.Cyclin.d VN---LLEVC K K--------- Site 989
Dictyostelium.discoideum.CDK10..Probable.cyclin.de VS---LLEVV I GS-------- Site 987
Homo.sapiens.CDKL5..sp.O76039.CDKL5_HUMAN.Cyclin.d VE---LKEAF R R--------- Site 989
Ajellomyces.capsulatus.CDK1 VR---LLNIV H A--------- Site 988
Dictystelium.discoideum.MAPK3..Extracellular.signa IS---IKDIL K PNS------- Site 984
Homo.sapiens.CDK6..sp.Q00534.CDK6_HUMAN.Cyclin.dep VR---LFDVC T VSR------- Site 984
Bos.taurus.CDK10..sp.Q2TBL8.CDK10_BOVIN.Cyclin.dep VE---LKEVV V GN-------- Site 987
Homo.sapiens.MAPK8.sp.P45983.MK08_HUMAN.Mitogen.ac IG---LLNVF T PQK------- Site 983
Mus.musculus.MAPK13..sp.Q9Z1B7.MK13_MOUSE.Mitogen. IG---LLDVF T PAS------- Site 983
Drosophila.melanogaster.CDK4..tr.Q94877.Q94877_DRO VK---LYEVC Q FLE------- Site 986
Xenopus.tropicalis.NLK2..sp.B1H3E1.NLK2_XENTR.Seri LS---ALDIL Q PPQ------- Site 984
Gallus.gallus.MAPK10..tr.E1C8C5.E1C8C5_CHICK.Uncha IS---LLNVF T PQK------- Site 983
Saccharomyces.cerevisiae.CDK1 VR---LYDIV H S--------- Site 989
Lodderomyces.elongisporus.IME2 VQ---VFEVF I DD-------- Site 987
Danio.rerio.MAPK14a..sp.Q9DGE2.MK14A_DANRE.Mitogen IG---LLDVF T PAT------- Site 983
Xenopus.tropicalis.CLK2..tr.F7C0E3.F7C0E3_XENTR.Un VQ---MYDWF D Y--------- Site 989
Gallus.gallus.CDKL5..tr.E1BTX0.E1BTX0_CHICK.Unchar VE---LKEAF R R--------- Site 989
Kluyveromyces.lactis.GSK3..tr.O60042.O60042_KLULC. ID---LKYYF L EQS------- Site 987
Drosophila.melanogaster.MAPK15..tr.Q9W354.Q9W354_D VR---LVDIF K AS-------- Site 989
Homo.sapiens.CLK4..Dual.specificity.protein.kinase VQ---MLEWF D H--------- Site 989
Xenopus.tropicalis.HIPK2..tr.F7A386.F7A386_XENTR.U VR---AYECF Q H--------- Site 989
Mus.musculus.CDKL1..sp.Q8CEQ0.CDKL1_MOUSE.Cyclin.d VN---LLEVF R R--------- Site 989
Mus.musculus.GSK3a..sp.Q2NL51.GSK3A_MOUSE.Glycogen VR---LRYFF Y SSG------- Site 985
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.CDK1 VG---LEAVI M Q--------- Site 989
Homo.sapiens.CDK4..sp.P11802.CDK4_HUMAN.Cyclin.dep VR---LMDVC A TSR------- Site 986
Cryptococcus.neoformans.SSN3..Serine.threonine.pro VS---LREVI L E--------- Site 989
Salmo.salar.CDK1 VE---LRDVI H T--------- Site 989
Xenopus.Laevis.CDK7..sp.P20911.CDK7_XENLA.Cyclin.d IG---LLDAF G H--------- Site 989
Homo.sapiens.CDK20..sp.Q8IZL9.CDK20_HUMAN.Cyclin.d VQ---LKAVF P H--------- Site 989
Homo.sapiens.TTK..sp.P33981.TTK_HUMAN.Dual.specifi IR---LYDYE I T--------- Site 989
Mus.musculus.GSK3b..sp.Q9WV60.GSK3B_MOUSE.Glycogen VR---LRYFF Y SSG------- Site 985
Homo.sapiens.SGK71..sp.Q8NE28.SGK71_HUMAN.Probable SV---YQELF I TWN------- Site 985
Aspergillus.fumigatus.IME2 VP---ALDIF L DP-------- Site 987
Danio.rerio.CDK8..Cyclin.dependent.kinase.8.OS.Dan IS---LQKVF L SH-------- Site 987
Oryzias.latipes.CLK2b.tr.H2M4E3.H2M4E3_ORYLA.Uncha VQ---MLEWF N Y--------- Site 989
Gallus.gallus.MAPK13..tr.E1C7W3.E1C7W3_CHICK.Uncha IG---LLDVF T SAP------- Site 983
Caenorhabditis.briggsae.NLK..sp.A8XSC1.NLK_CAEBR.S LS---LLDIL Q PANPSFFQEF Site 963
Mus.musculus.HIPK2.sp.Q9QZR5.HIPK2_MOUSE.Homeodoma VR---AYECF Q H--------- Site 989
Homo.sapiens.MAPK3..Mitogen.activated.protein.kina IG---IRDIL R AST------- Site 984
Mus.musculus.CDK17..sp.Q8K0D0.CDK17_MOUSE.Cyclin.d VT---LHDIV H T--------- Site 989
Homo.sapiens.CDK10..Cyclin.dependent.kinase.10.OS. VE---LKEVV V GN-------- Site 987
Danio.rerio.CDKL1..sp.Q6AXJ9.CDKL1_DANRE.Cyclin.de VN---LMEVF R R--------- Site 989
Drosophila.melanogaster.JNK..sp.P92208.JNK_DROME.S IG---LLNAF T PQR------- Site 983
Petromyzon.marinus.MAPK13..tr.S4RVM7.S4RVM7_PETMA. IG---LVDVF T PND------- Site 983
Candida.glabrata.IME2 IQ---VYEIF V DS-------- Site 987
Homo.sapiens.MAK..Serine.threonine.protein.kinase. IK---LKEVI R E--------- Site 989
Schizosaccharomyces.pombe.IME2 VN---IFDLY I DQ-------- Site 988
Scheffersomyces.stipitis.MAPK3..tr.A3GF15.A3GF15_P IS---ILAIQ R PVS------- Site 984
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Glossina.morsitans.CDK5..sp.Q2PQN9.CDK5_GLOMM.Cycl VR---LYDVL H S--------- Site 989
Mus.musculus.HIPK4..sp.Q3V016.HIPK4_MOUSE.Homeodom IR---FLEFF H D--------- Site 989
Homo.sapiens.CK1..gi.68303575.ref.NP_001020276.1.. PH---IRWYG Q E--------- Site 989
Mus.musculus.CDK18..sp.Q04899.CDK18_MOUSE.Cyclin.d VT---LHDLI H T--------- Site 989
Mus.musculus.CDKL4..sp.Q3TZA2.CDKL4_MOUSE.Cyclin.d VN---LIEVF R R--------- Site 989
Branchiostoma.floridae.CDK1 VR---LLDVV H S--------- Site 989
Gallus.gallus.CLK2..tr.Q5ZJ82.Q5ZJ82_CHICK.Unchara VR---MFDWF D Y--------- Site 989
Schizosaccharomyces.pombe.GSK3..sp.Q10452.GSK3_SCH VD---LIAYY Y TTG------- Site 985
Oikopleura.dioica.CDKL2..tr.E4XDC6.E4XDC6_OIKDI.CD VN---MLEHA R R--------- Site 989
Caenorhabditis.briggsae.GSK3..sp.A8X5H5.GSK3_CAEBR VK---LKYFF Y SSG------- Site 985
Taeniopygia.guttata.CDK10..tr.H0ZC86.H0ZC86_TAEGU. VE---LKDVV V GN-------- Site 987
Homo.sapiens.ICK..Serine.threonine.protein.kinase. VK---LKEVI R E--------- Site 989
Mus.musculus.CLK3..sp.O35492.CLK3_MOUSE.Dual.speci VL---MSDWF N F--------- Site 989
Mus.musculus.DYR1A..Dual.specificity.tyrosine.phos VH---LKRHF M F--------- Site 989
Mus.musculus.CDK2..sp.P97377.CDK2_MOUSE.Cyclin.dep VK---LLDVI H T--------- Site 989
Bos.taurus.MAPK7..sp.A5PKJ4.MK07_BOVIN.Mitogen.act IA---IKDIL R PTV------- Site 983
Homo.sapiens.MAPK14..sp.Q16539.MK14_HUMAN.Mitogen. IG---LLDVF T PAR------- Site 983
Lachancea.thermotolerans.SKY1 LS---LLDSF N HNG------- Site 989
Mus.musculus.MAPK6..sp.Q61532.MK06_MOUSE.Mitogen.a VK---VFEIL G PSG------- Site 975
Dictyostelium.discoideum.CDK1 VS---LFDVL H C--------- Site 989
Mus.musculus.MAPK12..sp.O08911.MK12_MOUSE.Mitogen. IG---LLDVF T PDE------- Site 983
Xenopus.tropicalis.IME2 VK---LLDVI H T--------- Site 989
Xenopus.tropicalis.HIPK1..tr.F6T404.F6T404_XENTR.U VR---SYECF Q H--------- Site 989
Gallus.gallus.CSK2a..sp.P21868.CSK21_CHICK.Casein. IT---LADIV K DP-------- Site 987
Xenopus.laevis.CDK2..sp.P23437.CDK2_XENLA.Cyclin.d VK---LLDVI H T--------- Site 989
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Gallus.gallus.CDK3..tr.F1NA68.F1NA68_CHICK.Unchara VR---LLDVV H S--------- Site 989
Mus.musculus.CDK15..Cyclin.dependent.kinase.15.OS. VL---LHDIV H T--------- Site 989
Dictyostelium.discoideum.MAPK1.sp.Q54QB1.ERK2_DICD IK---LLNVI K AD-------- Site 987
Homo.sapiens.DYR1A..Dual.specificity.tyrosine.phos VH---LKRHF M F--------- Site 989
Homo.sapiens.GSK3b..sp.P49841.GSK3B_HUMAN.Glycogen VR---LRYFF Y SSG------- Site 985
Drosophila.melanogaster.GSK3H..Putative.glycogen.s IT---LKWFF F SSG------- Site 985
Oikopleura.dioica.CDK10..tr.J7PN91.J7PN91_OIKDI.CD VK---LESVA V GQ-------- Site 987
Encephalitozoon.cuniculi.CDK1 VE---LSDVI Y N--------- Site 989
Saccharomyces.kluyveri.IME2 VQ---IYELF I DN-------- Site 985
Mus.musculus.CLK4..sp.O35493.CLK4_MOUSE.Dual.speci VQ---MLEWF D H--------- Site 989
Homo.sapiens.MAPK1..sp.P28482.MK01_HUMAN.Mitogen.a IG---INDII R APT------- Site 984
Homo.sapiens.CDK15..Cyclin.dependent.kinase.15.OS. VL---LHDII H T--------- Site 989
Cryptococcus.neoformans.IME2 IP---LYDAF I SP-------- Site 987
Homo.sapiens.HIPK4..Homeodomain.interacting.protei IR---FLEFF H D--------- Site 989
Mus.musculus.SRSF.sp.O70551.SRPK1_MOUSE.SRSF.prote VQ---LLDDF K ISG------- Site 989
Candida.lusitaniae.IME2 LQ---IYNLF I DE-------- Site 987
Mus.musculus.HIPK1..sp.O88904.HIPK1_MOUSE.Homeodom VR---SYECF Q H--------- Site 989
Aedes.aegypti.CDK8..Cyclin.dependent.kinase.8.OS.A IN---LIRVF L SH-------- Site 987
Danio.rerio.CDK20.sp.A8WIP6.CDK20_DANRE.Cyclin.dep VK---LKDVF P H--------- Site 989
Latimeria.chalumnae.CDKL1..tr.H3BGX9.H3BGX9_LATCH. VN---LLEVF R R--------- Site 989
Gallus.gallus.CDK2 VK---LLDVI H T--------- Site 989
Emericella.nidulans.CDK1 VR---LLNIV H A--------- Site 989
Homo.sapiens.MOK..MAPK.MAK.MRK.overlapping.kinase. LM---LHEVV F DR-------- Site 987
Homo.sapiens.CDK1 VS---LQDVL M Q--------- Site 989
Candida.albicans.CDK1 VR---LYDII H S--------- Site 989
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Danio.rerio.CK2a1..gi.40538752.ref.NP_571327.1..ca IT---LLDII K DP-------- Site 987
Mus.musculus.MAPK7..sp.Q9WVS8.MK07_MOUSE.Mitogen.a IA---IKDIL K PTV------- Site 983
Mus.musculus.ICK..Serine.threonine.protein.kinase. VK---LKEVI R E--------- Site 989
Saccharomyces.castelli.IME2 IQ---IFEIF A DT-------- Site 987
Salmo.salar.CLK4..tr.B5X280.B5X280_SALSA.Dual.spec VR---MLDWF D H--------- Site 989
Mus.musculus.CDK7..sp.Q03147.CDK7_MOUSE.Cyclin.dep IG---LLDAF G H--------- Site 989
Mus.musculus.CDK14..Cyclin.dependent.kinase.14.OS. VL---LHDII H T--------- Site 989
Micromonas.RCC299.GSK3..tr.C1ED07.C1ED07_MICSR.Gly VR---LKHCF Y STN------- Site 985
Saccharomyces.cerevisiae.CDC7..sp.P06243.CDC7_YEAS AP---LCDAK R V--------- Site 989
Carassius.auratus.CDK7..sp.P51953.CDK7_CARAU.Cycli IG---LLDAF G H--------- Site 989
Homo.sapiens.CDK9..Cyclin.dependent.kinase.9.OS.Ho VN---LIEIC R TKA------- Site 981
Homo.sapiens.HIPK2..Homeodomain.interacting.protei VR---AYECF Q H--------- Site 989
Acyrthosiphon.pisum.CDK1 VK---LYDVI M S--------- Site 989
Candida.tropicalis.CDK1 VQ---IFEMF I DD-------- Site 987
Drosophila.melanogaster.CDK8..Cyclin.dependent.kin IT---LIRVF L SH-------- Site 987
Suberites.domuncula.GSK3..tr.Q4H118.Q4H118_SUBDO.G VR---LQYFF Y SSG------- Site 985
Spodoptera.frugiperda.CSK2a..sp.O76484.CSK2A_SPOFR IT---LQAVV K DP-------- Site 987
Homo.sapiens.CDK16.sp.Q00536.CDK16_HUMAN.Cyclin.de VT---LHDII H T--------- Site 989
Arabidopsis.thaliana.CSK2a1..gi.30698301.ref.NP_20 VK---LLDVV R DQ-------- Site 987
Homo.sapiens.CDK17..sp.Q00537.CDK17_HUMAN.Cyclin.d VT---LHDIV H T--------- Site 989
Meleagris.gallopavo.MAPK13..tr.G1MQ62.G1MQ62_MELGA IG---LLDVF T SAP------- Site 983
Candida.albicans.SSN3..Serine.threonine.protein.ki TK---LVDII L E--------- Site 989
Micromonas.sp.RCC299.LF4..long.flagella.protein.LF IK---LLEVL Y DQ-------- Site 987
Lytechinus.variegatus.GSK3..tr.Q6IUG5.Q6IUG5_LYTVA VK---LKYFF Y SSG------- Site 985
Danio.rerio.MAPK13..tr.E7F292.E7F292_DANRE.Unchara IG---LLDVF T PAT------- Site 983
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Schizosaccharomyces.pombe.CDK9..Probable.cyclin.de IP---LSDMT V VRA------- Site 961
Xenopus.laevis.CSK2a1..sp.P28020.CSK21_XENLA.Casei IT---LADIV K DP-------- Site 987
Xenopus.tropicalis.HIPK3..tr.F6SEG6.F6SEG6_XENTR.U VR---AYECF Q H--------- Site 989
Mus.musculus.CDK11B.sp.P24788.CD11B_MOUSE.Cyclin.d VT---VREIV V GS-------- Site 987
Candida.dubliniensis.IME2 VQ---IYEMF I DD-------- Site 987
Mus.musculus.MAPK9..sp.Q9WTU6.MK09_MOUSE.Mitogen.a IS---LLNVF T PQK------- Site 983
Aspergillus.niger.IME2 VP---ALDIF L DP-------- Site 987
Xenopus.laevis.MAPK14..sp.P47812.MK14_XENLA.Mitoge IG---LLDVF S PAK------- Site 983
Homo.sapiens.CDKL3..sp.Q8IVW4.CDKL3_HUMAN.Cyclin.d VN---LIEVF R Q--------- Site 989
Homo.sapiens.CDK14..Cyclin.dependent.kinase.14.OS. VL---LHDII H T--------- Site 989
Homo.sapiens.CSK2a3...sp.Q8NEV1.CSK23_HUMAN.Casein IT---LADIV K DP-------- Site 987
Caenorhabditis.briggsae.DYRK1..Dual.specificity.ty VT---LKGHF V H--------- Site 989
Schizosaccharomyces.japonicus.IME2 VK---VFELI V DA-------- Site 988
Caenorhabditis.elegans.MAPK8.sp.Q8WQG9.JNK1_CAEEL. IG---ILNCF T PQK------- Site 983
Gallus.gallus.CDK1 VC---LQDVL M Q--------- Site 989
Homo.sapiens.CDK5..sp.Q00535.CDK5_HUMAN.Cyclin.dep VR---LHDVL H S--------- Site 989
Cordyceps.militaris.GSK3..tr.G3JGQ8.G3JGQ8_CORMM.P VQ---LKAFY Y SNG------- Site 985
Caenorhabditis.briggsae.CDK4..tr.Q8MUK2.Q8MUK2_CAE VS---LRTVL H TVD------- Site 985
Caenorhabditis.elegans.GSK3..sp.Q9U2Q9.GSK3_CAEEL. VK---LKYFF Y SSG------- Site 985
Homo.sapiens.MAPK12..sp.P53778.MK12_HUMAN.Mitogen. IG---LLDVF T PDE------- Site 983
Saccharmomyces.cerevisiase.CK2a2..sp.P19454.CSK22_ VG---LYDIV Q DA-------- Site 988
Kluyveromyces.waltii.IME2 VQ---IWELF I DD-------- Site 987
Debaryomyces.hansenii.SKY1 IQ---LLDTF T HKG------- Site 989
Saccharomyces.cerevisiae.IME2 IQ---IFEVF I DS-------- Site 987
Schizosaccharomyces.japonicus.b.IME2 ---------- - ----------  
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Xenopus.tropicalis.CDK6..tr.F6YRJ4.F6YRJ4_XENTR.Un VR---LFDVC T VSR------- Site 984
Gallus.gallus.CSK2a2..sp.P21869.CSK22_CHICK.Casein IN---LIDTV K DP-------- Site 987
Homo.sapiens.MAPK6..sp.Q16659.MK06_HUMAN.Mitogen.a VK---VFEIL G PSG------- Site 975
Mus.musculus.CDK6..sp.Q64261.CDK6_MOUSE.Cyclin.dep VR---LFDVC T VSR------- Site 984
Saccharomyces.cerevisiae.MRK1.sp.P50873.MRK1_YEAST VG---LQYYF Y EKD------- Site 985
Xenopus.laevis.MAPK12..tr.Q7ZZX6.Q7ZZX6_XENLA.Mapk IG---LLDVF T PDT------- Site 983
Mus.musculus.CDKL3.sp.Q8BLF2.CDKL3_MOUSE.Cyclin.de VN---LIEVF R Q--------- Site 989
Danio.rerio.MAPK8.sp.Q9DGD9.MK08_DANRE.Mitogen.act IG---LLNVF T PQK------- Site 983
Candida.albicans.IME2 VQ---IYEMF I DD-------- Site 987
Xenopus.laevis.CDK4..sp.Q91727.CDK4_XENLA.Cyclin.d VK---LMDVC A SAR------- Site 984
Dictyostelium.discoideum.CDK11..Cyclin.dependent.k VQ---IKEIV L GK-------- Site 987
Mus.musculus.MAPK14..sp.P47811.MK14_MOUSE.Mitogen. IG---LLDVF T PAR------- Site 983
Kluyveromyces.lactis.IME2 VT---IYEMF I DD-------- Site 987
Homo.sapiens.MAPK7..Mitogen.activated.protein.kina IA---IKDIL R PTV------- Site 983
Mus.musculus.MAPK10..sp.Q61831.MK10_MOUSE.Mitogen. IS---LLNVF T PQK------- Site 983
Homo.sapiens.MAPK11..sp.Q15759.MK11_HUMAN.Mitogen. IG---LLDVF T PAT------- Site 983
Drosophila.melanogaster.CK1b...gi.7292799.gb.AAF48 PR---IRHHG K E--------- Site 989
Mus.musculus.MAPK11..sp.Q9WUI1.MK11_MOUSE.Mitogen. IG---LLDVF T PAT------- Site 983
Amphimedon.queenslandica.CDK1 VS---LLDVL Y C--------- Site 989
Homo.sapiens.CDKL4..sp.Q5MAI5.CDKL4_HUMAN.Cyclin.d VN---LIEVF R R--------- Site 989
Taeniopygia.guttata.CDK3..tr.H0ZCU2.H0ZCU2_TAEGU.U VR---LLDVI H S--------- Site 989
Drosophila.melanogaster.CDK11.sp.Q9VPC0.KP58_DROME VT---VREIV V GS-------- Site 987
Neurospora.crassa.IME2 VP---ALDIF L DP-------- Site 985
Drosophila.melanogaster.CDK5..sp.P48609.CDK5_DROME VR---LIDVL H S--------- Site 989
Dictyostelium.discoideum.DYRK2..Probable.serine.th VH---LNNYF Y F--------- Site 989
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Mus.musculus.CDK4..sp.P30285.CDK4_MOUSE.Cyclin.dep VR---LMDVC A TSR------- Site 986
Hydra.magnipapillata.CDK1 VQ---LLDVI Q S--------- Site 989
Gallus.gallus.CDK10..tr.F1NCQ0.F1NCQ0_CHICK.Unchar VE---LKEVV V GN-------- Site 987
Ashbya.gossypii.IME2 VQ---IYELF I DD-------- Site 987
Mus.musculus.TTK..sp.P35761.TTK_MOUSE.Dual.specifi IR---LYDYE I T--------- Site 989
Homo.sapiens.DYRK3..Dual.specificity.tyrosine.phos IH---MLESF T F--------- Site 989
Saccharomyces.cerevisiae.RIM11..Serine.threonine.p ID---LKYFF Y ERD------- Site 986
Danio.rerio.MAPK15..tr.Q0H1F6.Q0H1F6_DANRE.Extrace IK---LLNVI R AQ-------- Site 987
Schizosaccharomyces.pombe.b.IME2 ID---LLETF M DP-------- Site 987
Mus.musculus.MAPK1..sp.P63085.MK01_MOUSE.Mitogen.a IG---INDII R APT------- Site 984
Mus.musculus.HIPK3..sp.Q9ERH7.HIPK3_MOUSE.Homeodom VR---AYECF Q H--------- Site 989
Schizosaccharomyces.pombe.CDK1 VR---LLDIL H A--------- Site 989
Oryzias.latipes.CLK2a..tr.H2LBC0.H2LBC0_ORYLA.Unch VQ---MYDWF D Y--------- Site 989
Saccoglossus.kowalevskii.CDK1 VR---LLDVV H S--------- Site 989
Mus.musculus.CK1..gi.20544149.ref.NP_620690.1..cas PT---IRWCG A E--------- Site 989
Mus.musculus.MAPK8.sp.Q91Y86.MK08_MOUSE.Mitogen.ac IG---LLNVF T PQK------- Site 983
Mus.musculus.CDK3..sp.Q80YP0.CDK3_MOUSE.Cyclin.dep IK---LLDVV H R--------- Site 989
Mus.musculus.SGK71..sp.Q80YS9.SGK71_MOUSE.Probable SL---YHEMF I MWN------- Site 985
Homo.sapiens.CDK3..sp.Q00526.CDK3_HUMAN.Cyclin.dep VR---LLDVV H N--------- Site 989
Yarrowia.lipolytica.IME2 VN---VHDMF V DS-------- Site 987
Saccharomyces.cerevisiae.SSN3..Meiotic.mRNA.stabil TT---LVEIF L E--------- Site 989
Carassius.auratus.CDK2..sp.P43450.CDK2_CARAU.Cycli VK---LHDVI H T--------- Site 989
Kluyveromyces.lactis.CDC7.tr.Q6CUJ8.Q6CUJ8_KLULA.K AP---LCDAI R Y--------- Site 989
Neurospora.crassa.GSK3..tr.Q9HE92.Q9HE92_NEUCS.Gly VQ---LKAFY Y SNG------- Site 985
Schizosaccharomyces.pombo.GSK3..Protein.kinase.gsk VD---LIAYY Y TTG------- Site 985
Species Residue at Site 1778
in 'msaprobs'
muscle

The residue for every species at site 1778 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Caenorhabditis.elegans.MBK1..Dual.specificity.tyro VT---LKGHF V H--------- Site 989
Mus.musculus.NLK..sp.O54949.NLK_MOUSE.Serine.threo LS---ALDIL Q PPH------- Site 984
Scheffersomyces.stipitis.SKY1 IQ---LLDTF T HKG------- Site 989
Mus.musculus.CDK5..sp.P49615.CDK5_MOUSE.Cyclin.dep VR---LHDVL H S--------- Site 989

Generated by PhyloBot at 16:22, October 23rd 2019
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