cmgc Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


❯ ❯ ❯ View Ancestors on Tree | View Ancestors Aligned | Search for Ancestors ❮ ❮ ❮


Select an Alignment & Model:

Alignment Method:

Markov Model:


ML Ancestral Sequences. Alignment: msaprobs, Model: PROTCATWAG

Download Alignment of Ancestors (FASTA)

Download Excel Spreadsheet (CSV)


Navigate Sites:

Navigate Sites

Use the links to navigate among the sites in ancestral reconstructions from the alignment msaprobs and phylogenetic model PROTCATWAG. You can either scroll through the sites using the lower/higher buttons, or jump directly to a site of interest.

Showing
Sites 1-30
Jump to Site:

Sites: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
Node330 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) K (0.912) - (None) - (None) - (None) - (None)
Node331 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) K (0.338) - (None) - (None) - (None) - (None)
Node332 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.417) - (None) - (None) - (None) - (None)
Node333 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (0.997) - (None) - (None) - (None) - (None) - (None) - (None) S (0.412) - (None) - (None) - (None) - (None)
Node334 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.876) - (None) - (None) - (None) - (None)
Node335 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.553) - (None) - (None) - (None) - (None)
Node336 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.55) - (None) - (None) - (None) - (None)
Node337 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) m (0.999) - (None) - (None) - (None) - (None) - (None) - (None) T (0.453) - (None) - (None) - (None) - (None)
Node338 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.348) - (None) - (None) - (None) - (None)
Node339 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.358) - (None) - (None) - (None) - (None)
Node340 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.432) - (None) - (None) - (None) - (None)
Node341 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.274) - (None) - (None) - (None) - (None)
Node342 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.303) - (None) - (None) - (None) - (None)
Node343 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node344 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node345 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node346 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node347 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node348 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node349 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node350 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node351 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node352 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node353 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node354 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None)
Node355 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) K (1.0) - (None) - (None) - (None) - (None)
Node356 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) K (0.998) - (None) - (None) - (None) - (None)
Node357 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) K (0.999) - (None) - (None) - (None) - (None)
Node358 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.494) - (None) - (None) - (None) - (None)
Node359 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) A (0.38) - (None) - (None) - (None) - (None)
Node360 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.207) - (None) - (None) - (None) - (None)
Node361 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) E (0.264) - (None) - (None) - (None) - (None)
Node362 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) E (0.952) - (None) - (None) - (None) - (None)
Node363 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) D (0.483) - (None) - (None) - (None) - (None)
Node364 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) P (0.924) - (None) - (None) - (None) - (None)
Node365 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) P (0.974) - (None) - (None) - (None) - (None)
Node366 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) P (0.962) - (None) - (None) - (None) - (None)
Node367 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.427) - (None) - (None) - (None) - (None)
Node368 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) T (0.965) - (None) - (None) - (None) - (None)
Node369 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.991) - (None) - (None) - (None) - (None)
Node370 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (1.0) - (None) - (None) - (None) - (None)
Node371 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (1.0) - (None) - (None) - (None) - (None)
Node372 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (1.0) - (None) - (None) - (None) - (None)
Node373 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (1.0) - (None) - (None) - (None) - (None)
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Node375 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) P (1.0) - (None) - (None) - (None) - (None)
Node376 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) P (0.906) - (None) - (None) - (None) - (None)
Node377 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) H (0.558) - (None) - (None) - (None) - (None)
Node378 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) I (1.0) - (None) - (None) - (None) - (None)
Node379 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.851) - (None) - (None) - (None) - (None)
Node380 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.982) - (None) - (None) - (None) - (None)
Node381 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.945) - (None) - (None) - (None) - (None)
Node382 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.915) - (None) - (None) - (None) - (None)
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Node384 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.821) - (None) - (None) - (None) - (None)
Node385 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.968) - (None) - (None) - (None) - (None)
Node386 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.953) - (None) - (None) - (None) - (None)
Node387 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) S (0.873) - (None) - (None) - (None) - (None)
Node388 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) N (0.45) - (None) - (None) - (None) - (None)
Node389 - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) - (None) M (1.0) - (None) - (None) - (None) - (None) - (None) - (None) N (0.538) - (None) - (None) - (None) - (None)
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